View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_396 (Length: 229)
Name: NF9795A_low_396
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_396 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 37705228 - 37705456
Alignment:
| Q |
1 |
gttttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaatgcattgagcatataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37705228 |
gttttttgtatggttcttaactaaactacaaaaatttctttaaatttataatttcttcaaagtttgttacagcacaaaagaaaatgcattgagcatataa |
37705327 |
T |
|
| Q |
101 |
aaagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccccctttataattggttcatcatggaccacatttcttat |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37705328 |
aaagaaaaagtatcagatgccatcggatatcgatactcaactcgtgggttctacggtagaccacctttataattggttcatcatggaccacatttcttat |
37705427 |
T |
|
| Q |
201 |
atttacgactaagtgggtgacttgattga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37705428 |
atttacgactaagtgggtgacttgattga |
37705456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 187
Target Start/End: Original strand, 37437931 - 37438116
Alignment:
| Q |
2 |
ttttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaatgcattgagcatataaa |
101 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| |||||| ||||||||||| |||||||||||| |
|
|
| T |
37437931 |
ttttttctatggttcttaactaaactacaaaaatttctttaaatttataatttcctcaaagcttattatagcacataagaaaatgcactgagcatataaa |
37438030 |
T |
|
| Q |
102 |
aagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccccctttataattggttcatcatgga |
187 |
Q |
| |
|
|||||||||||| | |||||| ||||||||||||||||| |||||||||| ||| ||| ||||||||| ||||||||||||| |
|
|
| T |
37438031 |
aagaaaaagtattaagtgtcatatgatatcgatactctactattgagttctactgtaaaccacctttataagcggttcatcatgga |
37438116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 37700646 - 37700753
Alignment:
| Q |
78 |
aagaaaatgcattgagcatataaaaagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccccctttataattggt |
177 |
Q |
| |
|
||||||||||| |||||| |||||||||||| ||| | ||||||||||||| ||||||||||||||||||||||| ||||||| | ||||||| |||| |
|
|
| T |
37700646 |
aagaaaatgcactgagcacataaaaagaaaacatattaagtgtcatcggatattgatactctactcgtgagttctaccgtagaccacttttataagtggt |
37700745 |
T |
|
| Q |
178 |
tcatcatg |
185 |
Q |
| |
|
|||||||| |
|
|
| T |
37700746 |
tcatcatg |
37700753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 16840796 - 16840646
Alignment:
| Q |
4 |
ttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaatgcattgagcatataaaaa |
103 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| | || | ||||||||| | | |||||||||||| |
|
|
| T |
16840796 |
ttttttatagtttttaactaaactacaaaaatttctttaaatctataatttattcaaagtttgttataacaaataagaaaatgtactaagcatataaaaa |
16840697 |
T |
|
| Q |
104 |
gaaaaagtatcagatgtcatcggata-tcgatactctactcgtgagttcta |
153 |
Q |
| |
|
|||||||||| | |||||| |||| | |||||||||||||||||||||| |
|
|
| T |
16840696 |
gaaaaagtattaagtgtcataagatatttgatactctactcgtgagttcta |
16840646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 8266027 - 8265959
Alignment:
| Q |
2 |
ttttttgtatggttcttaactaaactacaaa-aatttctttaaatttataattttttcaaagtttgtta |
69 |
Q |
| |
|
||||| ||||| ||||||||| ||||||| | ||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
8266027 |
tttttcgtatgattcttaacttaactacatacaatttctttaaatttataattttctcaaattttgtta |
8265959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 21595162 - 21595127
Alignment:
| Q |
34 |
atttctttaaatttataattttttcaaagtttgtta |
69 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21595162 |
atttctttaaattcataattttttcaaagtttgtta |
21595127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 2125101 - 2125168
Alignment:
| Q |
3 |
tttttgtatggttcttaactaaact-acaaaaatttctttaaatttataattttttcaaagtttgtta |
69 |
Q |
| |
|
|||| |||||||||||||||||| | || | |||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
2125101 |
ttttcgtatggttcttaactaaattcaccatgatttttttaaatttataattttctcaaagtttgtta |
2125168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University