View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_397 (Length: 228)
Name: NF9795A_low_397
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_397 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 34043020 - 34042800
Alignment:
| Q |
8 |
cgaataatattacctccagattcaatttgtgctgcgataagaagcgatcgaaatagttcatcgcaaggtacggaataaaagaatcaggatcattactcct |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34043020 |
cgaacaatattacctccagattcaatttgtgctgcgataagaagcgatcgaaatagttcatcgcaaggtacggaataaaagaatcaggatcatcactcct |
34042921 |
T |
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| Q |
108 |
cgagagctgaatgtaacaaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataacagaataaaagaaatttctcatgaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34042920 |
cgagagctgaatgtaacaaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataacagaataaaagaaatttctcatgaaa |
34042821 |
T |
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| Q |
208 |
cacaaagcgggagaagaatct |
228 |
Q |
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||||||||||||||||||||| |
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| T |
34042820 |
cacaaagcgggagaagaatct |
34042800 |
T |
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Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 4046193 - 4046366
Alignment:
| Q |
8 |
cgaataatattacctccagattcaatttgtgctgcgataagaagcgatcgaaatagttcatcgcaaggtacggaataaaagaatcaggatcattactcct |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||||||||||| ||||||||||||| |||||| |
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| T |
4046193 |
cgaacaatattacctccagattcaatttgtgctgcgatttgaaaagattgaaatagttcatcacaaggtacggaataaatgaatcaggatcatcactcct |
4046292 |
T |
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| Q |
108 |
cgagagctgaatgtaacaaaaaatcagcacaacaacgatatgattcggaaatgaaatcaacaacaaattaataa |
181 |
Q |
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||||| ||||||||||||||||||||||||| |||| ||||||||| |||| |||||||| ||||||| |||| |
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| T |
4046293 |
cgagaactgaatgtaacaaaaaatcagcacagcaaccatatgattcagaaactaaatcaactacaaattgataa |
4046366 |
T |
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