View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_4 (Length: 531)

Name: NF9795A_low_4
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_4
NF9795A_low_4
[»] scaffold0019 (1 HSPs)
scaffold0019 (17-531)||(8344-8858)
[»] chr6 (8 HSPs)
chr6 (123-529)||(11631501-11631907)
chr6 (101-529)||(11663141-11663569)
chr6 (101-484)||(11618370-11618753)
chr6 (92-529)||(11710015-11710452)
chr6 (126-529)||(11673525-11673928)
chr6 (124-503)||(11739337-11739716)
chr6 (124-197)||(12093565-12093638)
chr6 (124-185)||(11756309-11756370)
[»] scaffold0196 (1 HSPs)
scaffold0196 (79-526)||(12680-13127)
[»] chr1 (2 HSPs)
chr1 (340-527)||(44811728-44811915)
chr1 (123-194)||(44812055-44812126)
[»] chr4 (3 HSPs)
chr4 (101-189)||(31291038-31291126)
chr4 (415-508)||(38151448-38151541)
chr4 (110-182)||(27957851-27957923)


Alignment Details
Target: scaffold0019 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 17 - 531
Target Start/End: Original strand, 8344 - 8858
Alignment:
Q  17 ggacatcactgtatccgagttataaccaattagagtatcgcatgatttagaagtgtattgtgggagtgaaaagggaataaaactttaccgttccctttgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8344 ggacatcactgtatccgagttataaccaattagagtatcgcatgatttagaagtgtattgtgggagtgaaaagggaataaaactttaccgttccctttgt 8443  T
Q  117 tttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatactt 216  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8444 ttttgaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatactt 8543  T
Q  217 atgttcctcagtgttggttttgatgcattaccttcccatgaaaagtcggaacattttattgaaattgagcctttaaggttatcatcgaagcattttttct 316  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8544 atgttccttagtgttggttttgatgcattaccttcccatgaaaagtcagaacattttattgaaattgagcctttaaggttatcattgaagcattttttct 8643  T
Q  317 tgaaattttctctctgcagttccggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctgggatgct 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8644 tgaaattttctctctgcagttccggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctgggatgct 8743  T
Q  417 tgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctagaaaagaagca 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8744 tgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctagaaaagaagca 8843  T
Q  517 gcagataccaacaat 531  Q
    |||||||||||||||    
T  8844 gcagataccaacaat 8858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 175; Significance: 6e-94; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 123 - 529
Target Start/End: Original strand, 11631501 - 11631907
Alignment:
Q  123 aacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatacttatgttc 222  Q
    ||||||||||||||||||||| | ||| |||||||| || ||||||||||||||||| |||||||| ||||| || ||  ||||||| | | ||||||||    
T  11631501 aacttctccaagaattgttgctaagagggttgatttgccggagccaacttctccacagatagccactttttggccgtgcttaacctctaaatttatgttc 11631600  T
Q  223 ctcagtgttggttttgatgcattaccttcccatgaaaagtcggaacattttattgaaattgagcctttaaggttatcatcgaagcattttttcttgaaat 322  Q
    | ||| ||||| ||||||||||||||||||||||||||||  | | |||||||||||||||| ||||| ||||| ||||| ||||| |  ||||| ||||    
T  11631601 cgcagggttggctttgatgcattaccttcccatgaaaagttagcagattttattgaaattgatcctttgaggttgtcatcaaagcactcgttcttcaaat 11631700  T
Q  323 tttctctctgcagttccggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctgggatgcttgaaat 422  Q
    |||| ||||||||||| ||||| ||||||||| ||||||| ||||  || ||||||||||||| ||||||||| ||||| |||||||| || |||| |||    
T  11631701 tttcactctgcagttctggtgcatcaaggaaagtaacaattcgagcaaatgcaacttttgcctgaatgatcaccgcaatgacatctggaatacttgtaat 11631800  T
Q  423 tggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctagaaaagaagcagcagat 522  Q
    ||| |||||||  || |||| ||||||||||| ||||||||||||||||||||| |||||||  | ||  || |||||||||||||||||||||| |||     
T  11631801 tggctcttgaacaaggcgcacagttgccacaaaagtgaaaacattacttgcatgtaaaggaatatccaagaagtaacatgctagaaaagaagcagtagac 11631900  T
Q  523 accaaca 529  Q
    |||||||    
T  11631901 accaaca 11631907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 101 - 529
Target Start/End: Complemental strand, 11663569 - 11663141
Alignment:
Q  101 ttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatg 200  Q
    |||| ||||||||||| |||  ||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  11663569 ttacagttccctttgtatttggaacttctccgagaattgttgctaagagggttgattttcctgagccaacttctccacagatagccaccttttgcccacg 11663470  T
Q  201 tctaacctccatacttatgttcctcagtgttggttttgatgcattaccttcccatgaaaagtcggaacattttattgaaattgagcctttaaggttatca 300  Q
    |||||| |||| | ||||||| || |||||||| |||||||| ||||||||||||||||||||||   |||||||| ||| ||||||||| |||||||||    
T  11663469 tctaacgtccaaatttatgtttcttagtgttggatttgatgccttaccttcccatgaaaagtcggctgattttattaaaactgagcctttgaggttatca 11663370  T
Q  301 tcgaagcattttttcttgaaattttctctctgcagttccggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaa 400  Q
    |    |||  | ||||| |||||||| ||||||||||| || |||||||| |||||   ||||||||| || || ||||| || | ||| ||||| ||||    
T  11663369 ttattgcacatgttcttcaaattttcactctgcagttctggagcctcaagaaaattttgaatccgagaaaatgcgactttggcttgaataatcacagcaa 11663270  T
Q  401 taacatctggga-tgcttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataac 499  Q
     ||||||||||| |||| | |||||| |||||||  || || |||||||| || | |||||||||||| |||||| |||||||||||||||| || ||||    
T  11663269 caacatctgggattgctag-aattggctcttgaacaaggcgtaaagttgctacgaaagtgaaaacattgcttgcacgcaaaggaactttcaggaagtaac 11663171  T
Q  500 atgctagaaaagaagcagcagataccaaca 529  Q
    |||||| |||||||||||||||||||||||    
T  11663170 atgctataaaagaagcagcagataccaaca 11663141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 101 - 484
Target Start/End: Complemental strand, 11618753 - 11618370
Alignment:
Q  101 ttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatg 200  Q
    |||| ||||||||||||||  |||||||||||||||||||||| | ||  ||||||||||| || ||||||||||||||||| |||||||||||||||||    
T  11618753 ttacagttccctttgttttagaaacttctccaagaattgttgctaagatggttgattttccggaaccaacttctccacaaatggccaccttttgcccatg 11618654  T
Q  201 tctaacctccatacttatgttcctcagtgttggttttgatgcattaccttcccatgaaaagtcggaacattttattgaaattgagcctttaaggttatca 300  Q
    |||||| || | | |||||||||| |||| ||| ||||| |  |||||||||||||||||||||| ||||||||||||||||| | |||| |||| |||     
T  11618653 tctaacatctaaatttatgttccttagtgatggctttgacgagttaccttcccatgaaaagtcggcacattttattgaaattgtgtctttgaggtcatct 11618554  T
Q  301 tcgaagcattttttcttgaaattttctctctgcagttccggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaa 400  Q
    |  |||||  | ||| | |||||||| ||||||||||| ||||||||||||||||||||||||||||  || |||||||| |||| ||||||| ||||||    
T  11618553 ttaaagcacctgttcctaaaattttcactctgcagttctggtgcctcaaggaaattaacaatccgagcaaatgcaactttcgcctgaatgatcgctgcaa 11618454  T
Q  401 taacatctgggatgcttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaa 484  Q
    |||| ||||||||| ||| |||||| |||||||  || ||||||||||| || |  ||||||||||||||||||| || |||||    
T  11618453 taacttctgggatgtttgcaattggatcttgaacaaggcgcaaagttgcgaccaatgtgaaaacattacttgcattcagaggaa 11618370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 92 - 529
Target Start/End: Original strand, 11710015 - 11710452
Alignment:
Q  92 aataaaactttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccacctt 191  Q
    |||||||  |||| ||||||||||| ||   ||| ||||||||||||||||| |  |  |||||||||||||||||||||||||||||||||||||||||    
T  11710015 aataaaagcttacagttccctttgtattaggaacctctccaagaattgttgctaataccgttgattttcctgagccaacttctccacaaatagccacctt 11710114  T
Q  192 ttgcccatgtctaacctccatacttatgttcctcagtgttggttttgatgcattaccttcccatgaaaagtcggaacattttattgaaattgagccttta 291  Q
    ||||||| ||||||| ||||   ||||||| || |||||||| |||||||||||||||||||||||||||||||   |||||||| ||| ||||||  |     
T  11710115 ttgcccacgtctaacatccaagtttatgtttcttagtgttggctttgatgcattaccttcccatgaaaagtcggctgattttattaaaactgagcccctg 11710214  T
Q  292 aggttatcatcgaagcattttttcttgaaattttctctctgcagttccggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatga 391  Q
    ||||| ||||   ||    | || |||||| |||| ||||  ||||| ||||||||||||||||||   |||||||  || ||||||||||| | |||||    
T  11710215 aggttgtcattacagatgatgttattgaaactttcactctttagttctggtgcctcaaggaaattacatatccgagcaaatgcaacttttgcttgaatga 11710314  T
Q  392 tcactgcaataacatctgggatgcttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcag 491  Q
    |||| | ||||||||| || || | || ||||||  ||||||  || |  || |||||||||| ||||||||||||||||||||||||||||| ||| ||    
T  11710315 tcaccgtaataacatccggtatacctgtaattggcacttgaacaaggcctaatgttgccacaaaagtgaaaacattacttgcatgcaaaggaattttaag 11710414  T
Q  492 aaaataacatgctagaaaagaagcagcagataccaaca 529  Q
     || |||||||||||||||||||||||||| |||||||    
T  11710415 gaagtaacatgctagaaaagaagcagcagacaccaaca 11710452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 126 - 529
Target Start/End: Original strand, 11673525 - 11673928
Alignment:
Q  126 ttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatacttatgttcctc 225  Q
    |||||||||||||||||| | ||  ||||||||||||||||||||||| ||||||||||||||| |||| |||||| |||| |||| | ||||| | ||     
T  11673525 ttctccaagaattgttgctaagatggttgattttcctgagccaacttcgccacaaatagccaccctttgtccatgtttaacgtccaaatttatgcttctt 11673624  T
Q  226 agtgttggttttgatgcattaccttcccatgaaaagtcggaacattttattgaaattgagcctttaaggttatcatcgaagcattttttcttgaaatttt 325  Q
    |||||||| |||  |||||||| ||||||||||||||| |   |||  ||  | | ||||||||||||||||||||  ||||||   ||||| |||||||    
T  11673625 agtgttggctttattgcattactttcccatgaaaagtcagccgattcgataaagactgagcctttaaggttatcatttaagcatcggttcttaaaatttt 11673724  T
Q  326 ctctctgcagttccggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctgggatgcttgaaattgg 425  Q
    | || ||||||||  |||| |  || ||||||||||||| ||  || ||||||||||| | ||| ||||| |||||||||||||| || | || ||| ||    
T  11673725 cactttgcagttcttgtgcttggagaaaattaacaatcctagcaaatgcaacttttgcttgaataatcaccgcaataacatctggaatacctgtaatagg 11673824  T
Q  426 ttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctagaaaagaagcagcagatacc 525  Q
     |||||||  || || || |||||||||| |||||||||||||||||||||||||||||||||||  || |||||  | ||||||||||| | ||| |||    
T  11673825 atcttgaacaaggcgtaatgttgccacaaaagtgaaaacattacttgcatgcaaaggaactttcaagaagtaacagaccagaaaagaagccgaagacacc 11673924  T
Q  526 aaca 529  Q
    ||||    
T  11673925 aaca 11673928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 503
Target Start/End: Original strand, 11739337 - 11739716
Alignment:
Q  124 acttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgcccatgtctaacctccatacttatgttcc 223  Q
    |||||||| ||||| | ||| | |||||||||||| ||||||||||||||||||||||| || | |||||| ||    |||||||  |   |||| || |    
T  11739337 acttctccgagaatcgctgctaagagagttgatttacctgagccaacttctccacaaatggctatcttttgaccgacactaacctttaagtttatctttc 11739436  T
Q  224 tcagtgttggttttgatgcattaccttcccatgaaaagtcggaacattttattgaaattgagcctttaaggttatcatcgaagcattttttcttgaaatt 323  Q
    | | |||||||||  ||  || |  ||||||||||||||| ||| | || ||| |||||||||| || |  || ||||| |||||  | ||  |||||||    
T  11739437 ttattgttggtttcaatatatcatattcccatgaaaagtcagaagacttgattaaaattgagccattcaacttttcatcaaagcaagtctttctgaaatt 11739536  T
Q  324 ttctctctgcagttccggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctgggatgcttgaaatt 423  Q
    |   |||||||  || |||||||| ||||| |  ||||||||||| || ||||  ||||| | |||||||||| |||||||||| |||||| ||||||||    
T  11739537 tgaactctgcaactcaggtgcctcgaggaattccacaatccgagaaaatgcaatatttgcttgaatgatcactccaataacatcagggatggttgaaatt 11739636  T
Q  424 ggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgc 503  Q
    || ||||| || || || |  ||||||||||  ||||| | |||| | ||||| |||||||| ||||  || ||||||||    
T  11739637 ggatcttgcataagtcgtattgttgccacaaaggtgaatatattattcgcatgtaaaggaacattcaagaagtaacatgc 11739716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 12093565 - 12093638
Alignment:
Q  124 acttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttgccc 197  Q
    |||||||| ||||||| ||| |  | |||||||||||||||||||||||||||||||||||| | |||||||||    
T  12093565 acttctccgagaattgctgctaataaagttgattttcctgagccaacttctccacaaatagctatcttttgccc 12093638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 11756370 - 11756309
Alignment:
Q  124 acttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagc 185  Q
    |||||||| ||||||| ||| |  | ||||||||||||||||||||||||||||||||||||    
T  11756370 acttctccgagaattgctgctaataaagttgattttcctgagccaacttctccacaaatagc 11756309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 79 - 526
Target Start/End: Complemental strand, 13127 - 12680
Alignment:
Q  79 ggagtgaaaagggaataaaactttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccac 178  Q
    ||||| ||||||||||||||  ||||  |||||||||||||   ||||||||||||||||||||| |  || |||||||| || |||||||||| ||| |    
T  13127 ggagtcaaaagggaataaaaacttacaattccctttgttttaggaacttctccaagaattgttgctaaaagggttgatttgccagagccaacttttccgc 13028  T
Q  179 aaatagccaccttttgcccatgtctaacctccatacttatgttcctcagtgttggttttgatgcattaccttcccatgaaaagtcggaacattttattga 278  Q
    | |||||||||||||| |||||||||||||| | | ||||  |||||| |||||| ||| ||||||| ||||||||||||||||| |   ||||||||||    
T  13027 agatagccaccttttggccatgtctaacctcaaaatttatactcctcaatgttggctttaatgcattgccttcccatgaaaagtcagcggattttattga 12928  T
Q  279 aattgagcctttaaggttatcatcgaagcattttttcttgaaattttctctctgcagttccggtgcctcaaggaaattaacaatccgagagaacgcaact 378  Q
    |||||||||||| |||| | ||  |||||| |  ||||| |||||||  |||  ||  ||||| || | |||||||  | |||| ||||  || ||||||    
T  12927 aattgagcctttgaggtcaacacggaagcactcattcttcaaatttttactcaacaactccggggcattaaggaaaacagcaattcgagcaaatgcaact 12828  T
Q  379 tttgcctcaatgatcactgcaataacatctgggatgcttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgca 478  Q
    || || | ||| ||| ||| ||||||||| || |||||||||||||| |||||||  ||   ||||||||||||||  ||||||||||||||||||||||    
T  12827 ttagcttgaataatcgctgtaataacatccggaatgcttgaaattggatcttgaacaaggttcaaagttgccacaaatgtgaaaacattacttgcatgca 12728  T
Q  479 aaggaactttcagaaaataacatgctagaaaagaagcagcagatacca 526  Q
    | ||||||| ||  || |||||||| | |||||| ||| |||||||||    
T  12727 atggaacttccaagaagtaacatgccaaaaaagaggcaacagatacca 12680  T

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Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 340 - 527
Target Start/End: Complemental strand, 44811915 - 44811728
Alignment:
Q  340 ggtgcctcaaggaaattaacaatccgagagaacgcaacttttgcctcaatgatcactgcaataacatctgggatgcttgaaattggttcttgaatgagac 439  Q
    |||||||||||||| || | |||||||| ||||||||||||||||| ||| | |||  ||||||| |||||||||  |  ||| || |||||||  || |    
T  44811915 ggtgcctcaaggaattttagaatccgagcgaacgcaacttttgcctgaataaccaccccaataacgtctgggatggatctaatcggatcttgaacaaggc 44811816  T
Q  440 gcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctagaaaagaagcagcagataccaa 527  Q
    | |||||||| |||| ||||||||||||| |||||||||||||||| || |||||||| ||||||  ||| ||||||||||| |||||    
T  44811815 gtaaagttgctacaaaagtgaaaacattatttgcatgcaaaggaacgttaagaaaatagcatgctccaaacgaagcagcagagaccaa 44811728  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 44812126 - 44812055
Alignment:
Q  123 aacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccaccttttg 194  Q
    ||||||||||||||||| ||  | ||||| |||||| ||||||||||||||||||||||| || ||||||||    
T  44812126 aacttctccaagaattgctgataagagagatgatttgcctgagccaacttctccacaaatcgcgaccttttg 44812055  T

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Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 31291038 - 31291126
Alignment:
Q  101 ttaccgttccctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaatagccacc 189  Q
    |||| ||| |||| ||||| ||||||||||||||||||||||  |  || |||||||||||||||||||||||||||||||| ||||||    
T  31291038 ttacagttaccttagttttataaacttctccaagaattgttgttaatagtgttgattttcctgagccaacttctccacaaatggccacc 31291126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 415 - 508
Target Start/End: Original strand, 38151448 - 38151541
Alignment:
Q  415 cttgaaattggttcttgaatgagacgcaaagttgccacaatagtgaaaacattacttgcatgcaaaggaactttcagaaaataacatgctagaa 508  Q
    |||| |||||| |||||||  || ||||||||||| |||| |||||||||||||||||||||||||||||| | ||  || |||||||||||||    
T  38151448 cttgtaattggctcttgaacaaggcgcaaagttgcaacaaaagtgaaaacattacttgcatgcaaaggaacatccaagaagtaacatgctagaa 38151541  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 27957851 - 27957923
Alignment:
Q  110 cctttgttttttaaacttctccaagaattgttgcaatgagagttgattttcctgagccaacttctccacaaat 182  Q
    |||||||||| ||||||||||||||||||||||| |  || ||| ||||||||||| ||||||||||||||||    
T  27957851 cctttgttttataaacttctccaagaattgttgctaatagcgttaattttcctgagacaacttctccacaaat 27957923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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