View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_402 (Length: 228)

Name: NF9795A_low_402
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_402
NF9795A_low_402
[»] chr4 (7 HSPs)
chr4 (10-127)||(13771595-13771712)
chr4 (122-213)||(13772466-13772558)
chr4 (25-98)||(40252295-40252368)
chr4 (21-102)||(40058975-40059056)
chr4 (37-101)||(41621735-41621799)
chr4 (16-97)||(34835527-34835608)
chr4 (21-101)||(25852208-25852288)
[»] chr1 (8 HSPs)
chr1 (22-98)||(52135127-52135203)
chr1 (16-97)||(1378743-1378824)
chr1 (21-101)||(15059525-15059605)
chr1 (21-101)||(46607804-46607884)
chr1 (18-101)||(27454986-27455069)
chr1 (21-101)||(8077641-8077721)
chr1 (28-100)||(24216973-24217045)
chr1 (37-101)||(40802206-40802270)
[»] chr7 (9 HSPs)
chr7 (16-101)||(22264620-22264705)
chr7 (22-98)||(36173036-36173112)
chr7 (28-97)||(1469114-1469183)
chr7 (16-100)||(9769585-9769669)
chr7 (48-102)||(31197588-31197642)
chr7 (28-101)||(40332097-40332170)
chr7 (27-103)||(2344295-2344371)
chr7 (21-101)||(2751269-2751349)
chr7 (21-101)||(10091186-10091266)
[»] chr2 (7 HSPs)
chr2 (19-100)||(6007010-6007091)
chr2 (27-97)||(18691980-18692050)
chr2 (21-100)||(8192474-8192553)
chr2 (21-102)||(25293159-25293240)
chr2 (21-97)||(4852556-4852632)
chr2 (16-60)||(9088079-9088123)
chr2 (16-96)||(36179875-36179955)
[»] scaffold0028 (1 HSPs)
scaffold0028 (38-102)||(27769-27833)
[»] chr6 (7 HSPs)
chr6 (37-101)||(33499468-33499532)
chr6 (27-101)||(9208246-9208320)
chr6 (18-96)||(21182325-21182403)
chr6 (21-101)||(11007159-11007239)
chr6 (43-91)||(11675196-11675244)
chr6 (21-101)||(15360221-15360301)
chr6 (21-101)||(22576061-22576141)
[»] chr5 (4 HSPs)
chr5 (28-102)||(23270652-23270726)
chr5 (21-99)||(19145534-19145612)
chr5 (38-102)||(12317290-12317354)
chr5 (21-101)||(27498854-27498934)
[»] chr3 (8 HSPs)
chr3 (16-101)||(40133567-40133652)
chr3 (27-103)||(48977380-48977456)
chr3 (18-101)||(7485645-7485728)
chr3 (22-101)||(32151419-32151497)
chr3 (21-102)||(4252519-4252600)
chr3 (16-101)||(21362937-21363022)
chr3 (16-101)||(38732960-38733045)
chr3 (21-101)||(40940819-40940899)
[»] chr8 (5 HSPs)
chr8 (16-59)||(5202208-5202251)
chr8 (39-98)||(34694717-34694776)
chr8 (22-101)||(42643242-42643321)
chr8 (21-101)||(3734746-3734826)
chr8 (41-97)||(28908823-28908879)
[»] scaffold0576 (1 HSPs)
scaffold0576 (21-101)||(5205-5285)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 13771595 - 13771712
Alignment:
Q  10 gagatggacatcagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggttgtaatcct 109  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| || ||| | ||||||||||||||||||||||||||||| ||||||    
T  13771595 gagattgacatcagagggaatcgaatttgagaccttgagatgagcaaacttcaagatcccaagccaaccatcagaccaaccccaaatgggttggaatcct 13771694  T
Q  110 aatgtattatataaacaa 127  Q
    ||||||||||| ||||||    
T  13771695 aatgtattataaaaacaa 13771712  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 13772466 - 13772558
Alignment:
Q  122 aaacaaatagataaatttatgcacactaatcgtatacannnnnnn-acacattcatcaaatcaaatcataccacatcccacgtagatattttt 213  Q
    ||||||||||||||||||||||| ||||||| |||| |        |||||||||||||||||||||||||||||||||||||||||||||||    
T  13772466 aaacaaatagataaatttatgcatactaatcatatatattttttttacacattcatcaaatcaaatcataccacatcccacgtagatattttt 13772558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 40252368 - 40252295
Alignment:
Q  25 gagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgg 98  Q
    |||||||||| ||||||||||||||  |||| ||||||| |||||| |||||| |  |||||||||||||||||    
T  40252368 gagaatcgaacttgagaccttgagagaagcacactccaagattccaagtcaactactagaccaaccccaaatgg 40252295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 40058975 - 40059056
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggttg 102  Q
    ||||||||||||||  ||||||||  ||| ||||||||||||| || ||| | ||||||  || ||||||||||||||||||    
T  40058975 cagagagaatcgaacctgagacctctagaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgggttg 40059056  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 41621735 - 41621799
Alignment:
Q  37 tgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    ||||||||||||| ||||||||||||| ||  || | ||||||| || |||||||||||||||||    
T  41621735 tgagaccttgagaggagcaaactccaagatctcaagccaaccattaggccaaccccaaatgggtt 41621799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 34835608 - 34835527
Alignment:
Q  16 gacatcagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatg 97  Q
    |||| ||||| ||||||||  ||||||||| ||| |||||||||| || || ||| | ||||||  ||||||||||||||||    
T  34835608 gacaccagagggaatcgaacatgagaccttaagaggagcaaactctaagatcccaagccaaccactagaccaaccccaaatg 34835527  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 25852288 - 25852208
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    ||||| ||||||||  |||||||||  || ||||||||||||| || ||| | ||||||  || |||||||||||||||||    
T  25852288 cagagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgggtt 25852208  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 52135203 - 52135127
Alignment:
Q  22 agagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgg 98  Q
    ||||| |||||||  |||||| |||||||||||||||||||| || ||| ||||||||  |||||||||||||||||    
T  52135203 agagataatcgaacctgagacattgagatgagcaaactccaagatcccaagtcaaccactagaccaaccccaaatgg 52135127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 1378824 - 1378743
Alignment:
Q  16 gacatcagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatg 97  Q
    |||| |||||| |||||||  |||||||||  || ||| ||||||||| |||||| ||||||||  ||||||||||||||||    
T  1378824 gacaccagagaaaatcgaacatgagacctttggaggagtaaactccaagattccaagtcaaccactagaccaaccccaaatg 1378743  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 15059525 - 15059605
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    ||||||||||||||  ||||||||   || ||||||||||||| |||||| | ||||||  || |||||||||||||||||    
T  15059525 cagagagaatcgaacctgagacctctggaggagcaaactccaagattccaagccaaccactaggccaaccccaaatgggtt 15059605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 46607884 - 46607804
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    ||||| ||||||||  |||||||||  || ||||||||||||| || ||| ||||||||  || |||||||||||||||||    
T  46607884 cagagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagtcaaccactaggccaaccccaaatgggtt 46607804  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 27454986 - 27455069
Alignment:
Q  18 catcagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    |||||||| ||||||||  ||||||||   || ||||||||||||| || ||| | ||||||  ||||||||||||||||||||    
T  27454986 catcagagtgaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactagaccaaccccaaatgggtt 27455069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 8077721 - 8077641
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    ||||||||||||||  ||||||||   || ||||||||||||| || ||| | ||||||  || |||||||||||||||||    
T  8077721 cagagagaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgggtt 8077641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 24217045 - 24216973
Alignment:
Q  28 aatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggt 100  Q
    |||||||  ||||||||||||| ||||| ||||||| || ||| ||||||||  ||  |||||||||||||||    
T  24217045 aatcgaacctgagaccttgagaggagcacactccaagatcccaagtcaaccactaggtcaaccccaaatgggt 24216973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 40802206 - 40802270
Alignment:
Q  37 tgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    ||||||||||||||||||||||||||| ||  || | ||||||  |  |||||||||||||||||    
T  40802206 tgagaccttgagatgagcaaactccaatatctcaagccaaccacaaagccaaccccaaatgggtt 40802270  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 22264620 - 22264705
Alignment:
Q  16 gacatcagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    |||| ||||| ||||||||| ||||||||||||| ||||||||||||| ||||||   ||||| |  | |||||||||||||||||    
T  22264620 gacaccagagggaatcgaatctgagaccttgagaggagcaaactccaagattccaaaccaacccttcggccaaccccaaatgggtt 22264705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 36173112 - 36173036
Alignment:
Q  22 agagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgg 98  Q
    |||| ||||||||  ||| |||||||||||| ||||||||||||| ||| ||||| ||| || ||||||||||||||    
T  36173112 agagggaatcgaacctgaaaccttgagatgaacaaactccaaaatcccaagtcaatcataaggccaaccccaaatgg 36173036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 1469183 - 1469114
Alignment:
Q  28 aatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatg 97  Q
    |||||||  |||||||||||||||| |||||||||| ||| || ||||||||  || |||||||||||||    
T  1469183 aatcgaacctgagaccttgagatgaacaaactccaagatttcaagtcaaccactaggccaaccccaaatg 1469114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 9769669 - 9769585
Alignment:
Q  16 gacatcagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggt 100  Q
    |||||||||||||||| ||   || || |||||| ||||| ||||||| ||||||  |||||||| || ||||||||||||||||    
T  9769669 gacatcagagagaatcaaacccgaaacattgagaggagcacactccaagattccaaatcaaccattagcccaaccccaaatgggt 9769585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 31197642 - 31197588
Alignment:
Q  48 gatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggttg 102  Q
    |||||||||||||||| || ||| | ||||||  |||||||||||||||||||||    
T  31197642 gatgagcaaactccaagatcccaagccaaccactagaccaaccccaaatgggttg 31197588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 40332170 - 40332097
Alignment:
Q  28 aatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    |||||||  ||||||||| ||| ||||||||||||| ||| || | ||||||  |||||||| |||||||||||    
T  40332170 aatcgaacctgagacctttagaggagcaaactccaagatttcaagccaaccactagaccaactccaaatgggtt 40332097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 2344371 - 2344295
Alignment:
Q  27 gaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggttgt 103  Q
    ||||||||| ||||| |||  || ||||||||||||| || ||| | ||||||  || |||||||||||||||||||    
T  2344371 gaatcgaatctgagagctttggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgggttgt 2344295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 2751349 - 2751269
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    ||||| ||||||||  |||||||||  || ||||||||||||| || ||| | ||||||  || |||||||||||||||||    
T  2751349 cagagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgggtt 2751269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 10091266 - 10091186
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    ||||| ||||||||  ||||||||   || ||||||||||||| || ||| | ||||||  ||||||||||||||||||||    
T  10091266 cagagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactagaccaaccccaaatgggtt 10091186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 6007010 - 6007091
Alignment:
Q  19 atcagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggt 100  Q
    ||||||||||||||||| |   |||||||||  |||| ||||||| |||||| |||||||| ||||||||| ||||||||||    
T  6007010 atcagagagaatcgaatctagaaccttgagagaagcacactccaagattccaagtcaaccaccagaccaactccaaatgggt 6007091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 18692050 - 18691980
Alignment:
Q  27 gaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatg 97  Q
    ||||||||  ||||| ||||||||||||| |||||||||||||| |  |||||| || |||||||||||||    
T  18692050 gaatcgaacctgagatcttgagatgagcacactccaaaattccaagcaaaccattaggccaaccccaaatg 18691980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 8192474 - 8192553
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggt 100  Q
    ||||| ||||||||  ||||||||||||| ||||| ||||||| || ||| | ||||||  || ||||||||||||||||    
T  8192474 cagagggaatcgaacctgagaccttgagaggagcacactccaagatcccaagccaaccactaggccaaccccaaatgggt 8192553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 25293240 - 25293159
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggttg 102  Q
    ||||| ||||||||  ||||||||   || ||||||||||||| || ||| ||||||||  ||||||||| |||||||||||    
T  25293240 cagagggaatcgaacctgagacctctcgaggagcaaactccaagatcccaagtcaaccactagaccaacctcaaatgggttg 25293159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 4852632 - 4852556
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatg 97  Q
    ||||| ||||||||  |||||||||  || ||||||||||||| |||||| ||||||||  ||  ||||||||||||    
T  4852632 cagagggaatcgaacctgagacctttggaggagcaaactccaagattccaagtcaaccactaggtcaaccccaaatg 4852556  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 9088079 - 9088123
Alignment:
Q  16 gacatcagagagaatcgaatttgagaccttgagatgagcaaactc 60  Q
    ||||||||||  |||||||||||||| ||||||| ||||||||||    
T  9088079 gacatcagaggaaatcgaatttgagatcttgagaggagcaaactc 9088123  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 36179955 - 36179875
Alignment:
Q  16 gacatcagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaat 96  Q
    |||||||| ||||||||||  |||||||| |||||||  ||||||||| || | | || || || ||||||||||||||||    
T  36179955 gacatcagggagaatcgaacatgagacctcgagatgaaaaaactccaagatcctaagttaatcaccagaccaaccccaaat 36179875  T

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Target: scaffold0028 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 27833 - 27769
Alignment:
Q  38 gagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggttg 102  Q
    |||||||||||| |||||||||||||||| |||   ||||||  |||||||||||||||||||||    
T  27833 gagaccttgagaggagcaaactccaaaatcccaaaccaaccactagaccaaccccaaatgggttg 27769  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 33499532 - 33499468
Alignment:
Q  37 tgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    ||||||||||||| ||||||||||||| || ||| | |||||| ||| |||||||||||||||||    
T  33499532 tgagaccttgagaggagcaaactccaagatcccaagccaaccaccaggccaaccccaaatgggtt 33499468  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 9208320 - 9208246
Alignment:
Q  27 gaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    ||||||||  ||||||||||||| ||||||||||||| || |||   ||||||  ||| ||||||||||||||||    
T  9208320 gaatcgaacctgagaccttgagaggagcaaactccaagatcccaatccaaccactagaacaaccccaaatgggtt 9208246  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 21182403 - 21182325
Alignment:
Q  18 catcagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaat 96  Q
    ||||| || ||||||||| | ||| ||||||| ||||| |||||||||| ||| | |||| |||||| |||||||||||    
T  21182403 catcacagggaatcgaatctcagagcttgagaggagcacactccaaaatcccaagccaacaatcagatcaaccccaaat 21182325  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 11007239 - 11007159
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    ||||| ||||||||  |||||||||  || ||||||||||||| || ||| | ||||||  ||| ||||||||||||||||    
T  11007239 cagagtgaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactagatcaaccccaaatgggtt 11007159  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 11675244 - 11675196
Alignment:
Q  43 cttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccc 91  Q
    ||||||| ||||| ||| ||| ||||||||||||||||||| |||||||    
T  11675244 cttgagaggagcacacttcaagattccacgtcaaccatcaggccaaccc 11675196  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 15360221 - 15360301
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    ||||| ||||||||  |||||||||  || ||||||||||||| || ||| | ||||||  || |||||||||||||||||    
T  15360221 cagagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgggtt 15360301  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 22576141 - 22576061
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    ||||| ||||||||| ||||||||   || ||||||||||||| || ||| | ||||||  || |||||||||||||||||    
T  22576141 cagagggaatcgaatctgagacctctggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgggtt 22576061  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 23270652 - 23270726
Alignment:
Q  28 aatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggttg 102  Q
    ||||||| ||||||||||  |||||||||||||||| || ||| | ||||||  || ||||||||||||||||||    
T  23270652 aatcgaacttgagacctttggatgagcaaactccaagatcccaagccaaccactaggccaaccccaaatgggttg 23270726  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 19145534 - 19145612
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatggg 99  Q
    ||||| ||||||||   |||||||||||| ||||| ||||||| || ||| ||||||||  || |||||||||||||||    
T  19145534 cagagggaatcgaaccggagaccttgagaggagcatactccaagatcccaagtcaaccactaggccaaccccaaatggg 19145612  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 12317290 - 12317354
Alignment:
Q  38 gagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggttg 102  Q
    |||||||  ||| ||||||||||||| |||||| | ||||||  || ||||||||||||||||||    
T  12317290 gagacctcaagaggagcaaactccaagattccaagccaaccactaggccaaccccaaatgggttg 12317354  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 27498854 - 27498934
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    ||||| ||||||||  ||||||||  ||| ||||||||||||| |||||| | ||||||  ||  ||||||||||||||||    
T  27498854 cagagggaatcgaacctgagacctctagaggagcaaactccaagattccaagccaaccactaggtcaaccccaaatgggtt 27498934  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 40133567 - 40133652
Alignment:
Q  16 gacatcagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    |||| ||||| ||||||||  |||||||||  || |||||||||||||||| ||| | ||||||  || |||||||||||||||||    
T  40133567 gacaccagagggaatcgaacctgagacctttggaggagcaaactccaaaatcccaagccaaccactaggccaaccccaaatgggtt 40133652  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 48977456 - 48977380
Alignment:
Q  27 gaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggttgt 103  Q
    ||||||||  |||||||||  || ||||||||||||| || ||| ||||||||  || |||||||||||||||||||    
T  48977456 gaatcgaacctgagacctttggaggagcaaactccaagatcccaagtcaaccactaggccaaccccaaatgggttgt 48977380  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 7485645 - 7485728
Alignment:
Q  18 catcagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    |||||||| ||||||||  |||||||||  || ||||||||||||| || ||| ||||||||  |  |||||||||||||||||    
T  7485645 catcagagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagtcaaccactatgccaaccccaaatgggtt 7485728  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 32151497 - 32151419
Alignment:
Q  22 agagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    |||||||||||||||||| |||||  || ||||||||||||| || ||| ||||||||  || |||| ||||||||||||    
T  32151497 agagagaatcgaatttgaaacctttggaggagcaaactccaagatcccaagtcaaccactaggccaa-cccaaatgggtt 32151419  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 4252519 - 4252600
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggttg 102  Q
    ||||| ||||| || |||||||||||||| ||||| ||||||| ||  || | ||||||  || ||||||||||||||||||    
T  4252519 cagagggaatcaaacttgagaccttgagaggagcacactccaagatctcaagccaaccactaggccaaccccaaatgggttg 4252600  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 21363022 - 21362937
Alignment:
Q  16 gacatcagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    |||| ||||| ||||||||  ||||||||   || ||||||||||||| || ||| ||||||||  || |||||||||||||||||    
T  21363022 gacaccagagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagtcaaccactaggccaaccccaaatgggtt 21362937  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 38733045 - 38732960
Alignment:
Q  16 gacatcagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    |||| |||||||||||| |  ||||||||   || || |||||||||| |||||| ||||||||| || |||||| ||||||||||    
T  38733045 gacaacagagagaatcggacctgagacctctggaggaacaaactccaagattccaagtcaaccattagcccaacctcaaatgggtt 38732960  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 40940899 - 40940819
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    ||||| ||||||||  ||||||||   || ||||||||||||| || ||| | ||||||  ||||||||||||||||||||    
T  40940899 cagagggaatcgaacctgagacctctggaggagcaaactccaagatcccaagccaaccactagaccaaccccaaatgggtt 40940819  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 5202208 - 5202251
Alignment:
Q  16 gacatcagagagaatcgaatttgagaccttgagatgagcaaact 59  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||    
T  5202208 gacatcagagaaaatcgaacttgagactttgagatgagcaaact 5202251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 34694717 - 34694776
Alignment:
Q  39 agaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgg 98  Q
    ||||||||||| ||||||||||||| ||  || ||||||||  |||||||||||||||||    
T  34694717 agaccttgagaggagcaaactccaagatcacaagtcaaccactagaccaaccccaaatgg 34694776  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 42643242 - 42643321
Alignment:
Q  22 agagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    |||| ||||||||| ||||||||   || ||||||||||||| || ||| ||||||||  || |||||||||||||||||    
T  42643242 agagggaatcgaatctgagacctctggaggagcaaactccaagatcccaagtcaaccactaggccaaccccaaatgggtt 42643321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 3734746 - 3734826
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    ||||| ||||||||  |||||||||  || ||||||||||||| || ||| | ||||||  || |||||||||||||||||    
T  3734746 cagagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgggtt 3734826  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 28908879 - 28908823
Alignment:
Q  41 accttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatg 97  Q
    ||||||||| ||||||||||||||||||||   ||||||  |||||||| |||||||    
T  28908879 accttgagaggagcaaactccaaaattccaaaccaaccactagaccaactccaaatg 28908823  T

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Target: scaffold0576 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 5205 - 5285
Alignment:
Q  21 cagagagaatcgaatttgagaccttgagatgagcaaactccaaaattccacgtcaaccatcagaccaaccccaaatgggtt 101  Q
    ||||| ||||||||  |||||||||  || ||||||||||||| || ||| | ||||||  || |||||||||||||||||    
T  5205 cagagggaatcgaacctgagacctttggaggagcaaactccaagatcccaagccaaccactaggccaaccccaaatgggtt 5285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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