View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_403 (Length: 228)
Name: NF9795A_low_403
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_403 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6262421 - 6262641
Alignment:
| Q |
1 |
aattttttcatctgatgtgaagtatatggagacgtagtcttttacccatgtcttaatagcatcccaaacgtcaagtccatcaaccgcataagggtaatcc |
100 |
Q |
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| T |
6262421 |
aattttttcatctgatgtgaagtatatggagacgtagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcc |
6262520 |
T |
|
| Q |
101 |
tctatgagtagacgaagaccgtgaggggaagatgaatccgcaactgctattcctctaaataaacaagagcacaataattatacgggttaaatatattgtt |
200 |
Q |
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| T |
6262521 |
tctatgagtagacgaagaccgtgaggggaagatgaatccgcaactgctattcccctaaataaacaagatcacaataattatactggttaaatatattgtt |
6262620 |
T |
|
| Q |
201 |
agtccttataaaatcatgatc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
6262621 |
agtccttataaaatcatgatc |
6262641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 6449888 - 6450023
Alignment:
| Q |
21 |
agtatatggagacgtagtcttttacccatgtcttaatagcatcccaaacgtcaagtccatcaaccgcataagggtaatcctctatgagtagacgaagacc |
120 |
Q |
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| T |
6449888 |
agtataaggagacatagtcttggacccatgccttaatagcatcccatatttctagtccatcaacagcataagggtagtcctctatcacaagtcgaaggcc |
6449987 |
T |
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| Q |
121 |
gtgaggggaagatgaatccgcaactgctattcctct |
156 |
Q |
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| T |
6449988 |
gtgaggggaagagggatcctcaacagctaatcctct |
6450023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 6456357 - 6456430
Alignment:
| Q |
23 |
tatatggagacgtagtcttttacccatgtcttaatagcatcccaaacgtcaagtccatcaaccgcataagggta |
96 |
Q |
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| T |
6456357 |
tataaggagacatagtcttgaacccatgccttaatagcatcccatatttctagtccatcaacagcataagggta |
6456430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 6390101 - 6390177
Alignment:
| Q |
44 |
acccatgtcttaatagcatcccaaacgtcaagtccatcaaccgcataagggtaatcctctatgagtagacgaagacc |
120 |
Q |
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||||||| |||||||||| |||| | || ||||||||||| ||||| || ||||||||||| || ||||| ||||| |
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| T |
6390101 |
acccatgacttaatagcagcccatatctctagtccatcaacagcatatggataatcctctatcagaagacgcagacc |
6390177 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 9606114 - 9605992
Alignment:
| Q |
35 |
tagtcttttacccatgtcttaatagcatcccaaacgtcaagtccatcaaccgcataagggtaatcctctatgagtagacgaagaccgtgaggggaagatg |
134 |
Q |
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||||||| ||||||| ||||||||||||||| | || ||||||||||| ||||||||||| ||||| || | |||||||| || || || || |||| |
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| T |
9606114 |
tagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatg |
9606015 |
T |
|
| Q |
135 |
aatccgcaactgctattcctcta |
157 |
Q |
| |
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|||| |||| |||| ||||||| |
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| T |
9606014 |
gatcctcaacggctaatcctcta |
9605992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 36926207 - 36926126
Alignment:
| Q |
21 |
agtatatggagacgtagtcttttacccatgtcttaatagcatcccaaacgtcaagtccatcaaccgcataagggtaatcctc |
102 |
Q |
| |
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|||| |||||| ||||||||| ||||||||||| || ||| ||||| || ||||||||||| ||||||||||||||||| |
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| T |
36926207 |
agtaaatggagcagtagtctttaacccatgtcttgatggcaaaccaaatctccagtccatcaactgcataagggtaatcctc |
36926126 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 42689426 - 42689358
Alignment:
| Q |
76 |
tccatcaaccgcataagggtaatcctctatgagtagacgaagaccgtgaggggaagatgaatccgcaac |
144 |
Q |
| |
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||||||||| ||||||||||| |||||||| || |||||||| |||| ||||| |||| |||| |||| |
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| T |
42689426 |
tccatcaacagcataagggtagtcctctatcagaagacgaagtccgtatggggacgatggatcctcaac |
42689358 |
T |
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