View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_404 (Length: 227)
Name: NF9795A_low_404
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_404 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 17032097 - 17032295
Alignment:
| Q |
1 |
atcaacaaaaagtttatcagcta--gatctacttcactagcttgttggctaaataatgcatagctatattgttctatatatagtaaagatatcgtgttca |
98 |
Q |
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| T |
17032097 |
atcaacaaaaagtttatgagctatagatctacttcactagcttgttggctaaataatgcatagctatattgttctatatatagtaaagatatcgtgttca |
17032196 |
T |
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| Q |
99 |
aagtacaaatatatgtgaaaatttgtgtggatgtgtaaaaaattagttttttatcactgaacaatgaacatagtcaggatgtttggcaaaaggaattgg |
197 |
Q |
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| T |
17032197 |
aagtacaaatatatgtgaaaatttgtgtggccatttataaagttagtctactatcattgaacaatgaacatagtcaggatgtttggccataggaattgg |
17032295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 16994792 - 16994976
Alignment:
| Q |
42 |
gttggctaaataatgcatagctatattgttctatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggatgtgtaaaaaat |
141 |
Q |
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| T |
16994792 |
gttggctaaataatgcatag-tataatgttctatatatattacaaatattgggttcaaagcacaaagatacttgaaaatttgtgtggccatttataaagt |
16994890 |
T |
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| Q |
142 |
tagttttttatcactgaacaatgaacatagtcaggatgtttggcaaaaggaattggtatattattatgaaatcaaatatattcttc |
227 |
Q |
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| T |
16994891 |
tagtctactatcattgaacaatgaacatagtcaggatgtttggcaaaaggaattggtatattattatgaaatcaaatatattcttc |
16994976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 17018027 - 17018211
Alignment:
| Q |
42 |
gttggctaaataatgcatagctatattgttctatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggatgtgtaaaaaat |
141 |
Q |
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| T |
17018027 |
gttggctaaataatgcatag-tataatgttctatatatattacaaatattgggttcaaagcacaaagatacttgaaaatttgtgtggccatttataaagt |
17018125 |
T |
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| Q |
142 |
tagttttttatcactgaacaatgaacatagtcaggatgtttggcaaaaggaattggtatattattatgaaatcaaatatattcttc |
227 |
Q |
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| T |
17018126 |
tagtctactatcattgaacaatgaacatagtcaggatgtttggcaaaaggaattggtatattattatgaaatcaaatatattcttc |
17018211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 17048544 - 17048731
Alignment:
| Q |
42 |
gttggctaaataatgcatagctatattgttctatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggatgtgtaaaaaat |
141 |
Q |
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||||||||||| |||||||| |||| |||||||||||||||| | |||| | |||||||||||||| ||| |||||||||||||||| | || ||| | |
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| T |
17048544 |
gttggctaaatgatgcatag-tataatgttctatatatagtacaaatattgggttcaaagtacaaagatacgtgaaaatttgtgtggccatttataaagt |
17048642 |
T |
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| Q |
142 |
tagttttttatcactgaacaatgaacatagtcaggatgtttggcaaaaggaatt-ggtatattat--tatgaaatcaaatatattcttc |
227 |
Q |
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| T |
17048643 |
tagtctactatcattgaacaatgaacatagtcaggatgtttggcaataggaattgggaatatcattatatgaaatcaaatatattcttc |
17048731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 42 - 197
Target Start/End: Original strand, 17042678 - 17042832
Alignment:
| Q |
42 |
gttggctaaataatgcatagctatattgttctatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtggatgtgtaaaaaat |
141 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||| | |||| | |||||||||||||| ||| |||||||||||||||| | || ||| | |
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| T |
17042678 |
gttggctaaataatgcatag-tataatgttctatatatagtacaaatattgggttcaaagtacaaagatacgtgaaaatttgtgtggccatttataaagt |
17042776 |
T |
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| Q |
142 |
tagttttttatcactgaacaatgaacatagtcaggatgtttggcaaaaggaattgg |
197 |
Q |
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|||| | ||||| |||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
17042777 |
tagtctactatcattgaaaaatgaacatagtcaggatgtttggcaataggaattgg |
17042832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 17017288 - 17017344
Alignment:
| Q |
72 |
ctatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtgg |
128 |
Q |
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|||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
17017288 |
ctatatatagtacagatattgtgttcaaagtacaaatatacgtgaaaatttgtgtgg |
17017344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 197
Target Start/End: Original strand, 17036853 - 17037013
Alignment:
| Q |
42 |
gttggctaaataatgcatagctatattgttctatatatagtaaagatatcgtgttcaaagtacaaatatatgt------gaaaatttgtgtggatgtgta |
135 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||||||| | |||| | |||||||| ||||| |||| | |||||||| ||||| | || |
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| T |
17036853 |
gttggctaaataatgcatag-tataatgttctatatatagtacaaatattgggttcaaagcacaaagatatatatacttgaaaatttttgtggccattta |
17036951 |
T |
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| Q |
136 |
aaaaattagttttttatcactgaacaatgaacatagtcaggatgtttggcaaaaggaattgg |
197 |
Q |
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||| ||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
17036952 |
taaagttagtcagctatcattgaaaaatgaacatagtcaggatgtttggcaataggaattgg |
17037013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 16988137 - 16988192
Alignment:
| Q |
73 |
tatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaatttgtgtgg |
128 |
Q |
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||||||||||| | |||| |||||||||||||||||||| ||| |||||||||||| |
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| T |
16988137 |
tatatatagtacatatattgtgttcaaagtacaaatatacgtgtaaatttgtgtgg |
16988192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17002767 - 17002808
Alignment:
| Q |
1 |
atcaacaaaaagtttatcagctagatctacttcactagcttg |
42 |
Q |
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||||||| |||| | ||||||||||||||||||||||||||| |
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| T |
17002767 |
atcaacataaagctaatcagctagatctacttcactagcttg |
17002808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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