View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_405 (Length: 227)
Name: NF9795A_low_405
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_405 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 7309971 - 7309764
Alignment:
| Q |
1 |
tttgaatttcgctctattgttgaaattggttcattttgaattgtagatctacaacctgagcttcaaacacatcaagcgacaagcatgaatgatggaacat |
100 |
Q |
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| T |
7309971 |
tttgaatttcgctctattgttgaaattggttcattttgaattgtagatctacaacctgagcttcaaacacatcaagc-------atgaatgatggaacat |
7309879 |
T |
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| Q |
101 |
ggcggcagaatgttatgaagaaaaatattgcagcttattggaacttgtttgtttattgtactaattttacagggcctattttcacccgagctaaaactcc |
200 |
Q |
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| T |
7309878 |
ggcggcagaatgctatgaagcaaaatattgcagctttttggaacttgtttgtttattgtactaattttatagagcctattttcacccgagctaaaactcc |
7309779 |
T |
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| Q |
201 |
attgctatttatgag |
215 |
Q |
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| T |
7309778 |
attgctatttatgag |
7309764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 7330063 - 7330181
Alignment:
| Q |
87 |
gaatgatggaacatggcggcagaatgttatgaagaaaaatattgcagcttattgg------aacttgtttgtttattgtactaattttacagggcctatt |
180 |
Q |
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| T |
7330063 |
gaatgatggagcatggctgcggaatgctatgaagaaaaatattggagcttattggaactacaacttgtttggttattgtactcattttata--gtctatt |
7330160 |
T |
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| Q |
181 |
ttcacccgagctaaaactcca |
201 |
Q |
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| T |
7330161 |
ttcacccgagctaaaactcca |
7330181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 7330012 - 7330056
Alignment:
| Q |
15 |
tattgttgaaattggttcattttgaattgtagatctacaacctga |
59 |
Q |
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| T |
7330012 |
tattgtttaaatgggttcattttgaattgtagatctacaacctga |
7330056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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