View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_406 (Length: 227)
Name: NF9795A_low_406
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_406 |
 | |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0897 (1 HSPs) |
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| [»] scaffold0304 (2 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0108 (1 HSPs) |
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| [»] scaffold0319 (1 HSPs) |
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| [»] chr3 (5 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0040 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0241 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 23196201 - 23196428
Alignment:
| Q |
2 |
ttcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaag-aacctcccttttgaagttttctagtttctgtttatagcat |
100 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||| || ||| ||| ||| ||||||| ||||||||| |||||| |
|
|
| T |
23196201 |
ttcgatggtttctcgacctttttgggtttggccaacttatgtaggtccttccatcgaaggaaaatccttttagaa-ttttctaatttctgtttgtagcat |
23196299 |
T |
|
| Q |
101 |
ttcttttgtaacggtttaccttacgctcttttagagctcattttgaaac--tttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttga |
198 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
23196300 |
ttcttttgtaatggtttactttgcgctcttttagagctcattttgaagtcttttttgtgtaaaccgcccattagttggccttatgaaatgctatgtttga |
23196399 |
T |
|
| Q |
199 |
atttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
23196400 |
atttgtcttttcgaattactcttgtatga |
23196428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 23621806 - 23622032
Alignment:
| Q |
2 |
ttcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaag-aacctcccttttgaagttttctagtttctgtttatagcat |
100 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||| ||| || ||| ||| ||| ||||||| ||||||||| |||||| |
|
|
| T |
23621806 |
ttcgatggtttctcgacctttttgggtttggccaacttatgtaggtccttccatcaaaggaaaatccttttagaa-ttttctaatttctgtttgtagcat |
23621904 |
T |
|
| Q |
101 |
ttcttttgtaacggtttaccttacgctcttttagagctcattttgaaa-ctttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaa |
199 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||||| |||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
23621905 |
ttcttttgtaatggtttactttgcgctcttttagagttcattttgaagtctttttgtgtagaccgcccattagttggccttatgaaatgctatgtttgaa |
23622004 |
T |
|
| Q |
200 |
tttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
23622005 |
tttgtcttttcgaattactcttgtatga |
23622032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 22643151 - 22642924
Alignment:
| Q |
2 |
ttcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaag-aacctcccttttgaagttttctagtttctgtttatagcat |
100 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||| || ||| ||| ||| ||||||| ||||||||| |||||| |
|
|
| T |
22643151 |
ttcgatggtttctcgacctttttgggtttggccaacttatgtaggtccttccatcgaaggaaaatccttttagaa-ttttctaatttctgtttgtagcat |
22643053 |
T |
|
| Q |
101 |
ttcttttgtaacggtttaccttacgctcttttagagctcattttgaaac--tttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttga |
198 |
Q |
| |
|
||||||||||| ||||||| || | |||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||||||| ||| ||||| |
|
|
| T |
22643052 |
ttcttttgtaatggtttactttgctctcttttagagctcattttgaattcttttttgtgtaaaccacccattagttggccttatgaaattttatttttga |
22642953 |
T |
|
| Q |
199 |
atttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
22642952 |
atttatcttttcgaattactcttgtatga |
22642924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 198
Target Start/End: Complemental strand, 24954477 - 24954365
Alignment:
| Q |
85 |
tttctgtttatagcatttcttttgtaacggtttaccttacgctctttt-agagctcattttgaaactttttgtgtaaaccgcccattagttagccccatg |
183 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| | ||||||||| ||||| |||||||| || ||||||||||||||||||||| || |||| |
|
|
| T |
24954477 |
tttctgtttgtagcatttcttttgtaatggtttacttcgcgctctttttagagcctcttttgaaa--ttatgtgtaaaccgcccattagttggcttcatg |
24954380 |
T |
|
| Q |
184 |
aaatgctatgtttga |
198 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
24954379 |
aaatgctatatttga |
24954365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 18166979 - 18167203
Alignment:
| Q |
2 |
ttcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaag-aacctcccttttgaagttttctagtttctgtttatagcat |
100 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||| || ||| ||| ||| ||||||| ||||||||| |||||| |
|
|
| T |
18166979 |
ttcgatggtttctcgacctttttgggtttggccaacttatgtaggtccttccatcgaaggaaaatccttttagaa-ttttctaatttctgtttgtagcat |
18167077 |
T |
|
| Q |
101 |
ttcttttgtaacggtttaccttacgctcttttagagctcattttgaaac--tttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttga |
198 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
18167078 |
ttcttttgtaatggtttactttgcgctcttttagagctcattttgaagtcttttttgtgtaaaccgcccattagttggccttatgaaatgctatgtttga |
18167177 |
T |
|
| Q |
199 |
atttatcttttcgaattactcttgta |
224 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
18167178 |
atttgtcttttcgaattactcttgta |
18167203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 14329408 - 14329549
Alignment:
| Q |
85 |
tttctgtttatagcatttcttttgtaacggtttaccttacgctctttt-agagctcattttgaaactttttgtgtaaaccgcccattagttagccccatg |
183 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| | ||||||||| ||||| ||||| ||| || ||||||||||||||||||| | || |||| |
|
|
| T |
14329408 |
tttctgtttgtagcatttcttttgtaacggtttacttcgcgctctttttagagcctatttttaaa--ttatgtgtaaaccgcccattagctggcttcatg |
14329505 |
T |
|
| Q |
184 |
aaatgctatgtttgaatttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
14329506 |
aaatgctatatttgagtctatcttttcgaattactcttgtatga |
14329549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 4195 - 4422
Alignment:
| Q |
2 |
ttcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaag-aacctcccttttgaagttttctagtttctgtttatagcat |
100 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| ||||||||| |||||||||||| || ||| ||| ||| ||||||| ||||||||| |||||| |
|
|
| T |
4195 |
ttcgatggtttctcgacctttttgggtttggccaacttatgtaggtacttccatcgaaggaaaatccttttagaa-ttttctaatttctgtttgtagcat |
4293 |
T |
|
| Q |
101 |
ttctttt-gtaacggtttaccttacgctcttttagagctcattttgaaa-ctttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttga |
198 |
Q |
| |
|
||||||| |||| ||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
4294 |
ttctttttgtaatggtttactttgcgctcttttagagctcattttgaagtctttttgtgtaaaccgcccattagttggccttatgaaatgctatgtttga |
4393 |
T |
|
| Q |
199 |
atttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
4394 |
atttgtcttttcgaattactcttgtatga |
4422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 18382 - 18609
Alignment:
| Q |
2 |
ttcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaag-aacctcccttttgaagttttctagtttctgtttatagcat |
100 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| ||||||||| | ||||||||||| || ||| ||| ||| ||||||| ||||||||| |||||| |
|
|
| T |
18382 |
ttcgatggtttctcgacctttttgggtttggccaacttatgtaggtcattccatcgaaggaaaatccttttagaa-ttttctaatttctgtttgtagcat |
18480 |
T |
|
| Q |
101 |
ttcttttgtaacggtttaccttacgctcttttagagctcattttgaaa-ct-ttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttga |
198 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||| ||||||||| || |||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
18481 |
ttcttttgtaatggtttactttgcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggccttatgaaatgctatgtttga |
18580 |
T |
|
| Q |
199 |
atttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
18581 |
atttgtcttttcgaattactcttgtatga |
18609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 12631 - 12689
Alignment:
| Q |
2 |
ttcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaag |
60 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
12631 |
ttcgatggtttctcgacctttttgggtttggccaacttatgtaggtcattccatcgaag |
12689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 28445 - 28222
Alignment:
| Q |
2 |
ttcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaacctcccttttgaagttttctagtttctgtttatagcatt |
101 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| ||||||||| |||||||||||| | ||| ||| ||| ||||||| ||||||||| ||||||| |
|
|
| T |
28445 |
ttcgatggtttctcgacctttttgggtttggccaacttatgtaggtccttccatcgaaaatcct---tttagaa-ttttctaatttctgtttctagcatt |
28350 |
T |
|
| Q |
102 |
tcttttgtaacggtttaccttacgctcttttagagctcattttgaaactt--tttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaa |
199 |
Q |
| |
|
|||||||||| ||||||| || |||||||||||||| | ||||||| || ||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
28349 |
tcttttgtaatggtttactttgcgctcttttagagcccgttttgaagtttcttttgtgtaaaccgcccattagttggccttatgaaatgctatgtttgaa |
28250 |
T |
|
| Q |
200 |
tttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
28249 |
tttgtcttttcgaattactcttgtatga |
28222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 74261 - 74034
Alignment:
| Q |
2 |
ttcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaacctcccttttgaagttttctagtttctgtttatagcatt |
101 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||| ||||||||| ||||||||||| ||| |||||| | ||||||| ||||| || |||||||| |
|
|
| T |
74261 |
ttcgatggtttctcgacctttttgggttttgccaacttatgtaggtccttccatcgaggaaaaatccttttagaattttctaatttctattgatagcatt |
74162 |
T |
|
| Q |
102 |
tcttttgtaacggtttaccttacgctctttt-agagctcattttgaaa-ctttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaa |
199 |
Q |
| |
|
|||||||||| ||||||| || ||||||||| ||||| ||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
74161 |
tcttttgtaatggtttactttgcgctctttttagagcccattttgaagtctttttgtgtaaaccgcccattagttggctttatgaaatgctatgtttgaa |
74062 |
T |
|
| Q |
200 |
tttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
74061 |
tttatcttttcgaattactcttgtatga |
74034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 33001 - 33229
Alignment:
| Q |
2 |
ttcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaag-aacctcccttttgaagttttctagtttct-gtttatagca |
99 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| ||||||||| | ||||||||||| || ||| ||| ||| ||||||| ||||| |||| ||||| |
|
|
| T |
33001 |
ttcgatggtttctcgacctttttgggtttggccaacttatgtaggtcattccatcgaaggaaaatccttttagaa-ttttctaatttcttgtttgtagca |
33099 |
T |
|
| Q |
100 |
tttcttttgtaacggtttaccttacgctcttttagagctcattttgaaa-ct-ttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttg |
197 |
Q |
| |
|
|||||||||||| ||||||| || |||||||||||||| ||||||||| || |||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
33100 |
tttcttttgtaatggtttactttgcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggccttatgaaatgctatgtttg |
33199 |
T |
|
| Q |
198 |
aatttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
|
|
| T |
33200 |
aatttgtcttttcgaattactcttgtatga |
33229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 14562587 - 14562815
Alignment:
| Q |
2 |
ttcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaag-aacctcccttttgaagttttctagtttct-gtttatagca |
99 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| ||||||||| | ||||||||||| || ||| ||| ||| ||||||| ||||| |||| ||||| |
|
|
| T |
14562587 |
ttcgatggtttctcgacctttttgggtttggccaacttatgtaggtcattccatcgaaggaaaatccttttagaa-ttttctaatttcttgtttgtagca |
14562685 |
T |
|
| Q |
100 |
tttcttttgtaacggtttaccttacgctcttttagagctcattttgaaa-ct-ttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttg |
197 |
Q |
| |
|
|||||||||||| ||||||| || |||||||||||||| ||||||||| || |||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
14562686 |
tttcttttgtaatggtttactttgcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggccttatgaaatgctatgtttg |
14562785 |
T |
|
| Q |
198 |
aatttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
|
|
| T |
14562786 |
aatttgtcttttcgaattactcttgtatga |
14562815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 13284724 - 13284942
Alignment:
| Q |
2 |
ttcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaacctcccttttgaagttttctagtttctgttt-atagcat |
100 |
Q |
| |
|
|||| ||||| ||||||||||| || |||||||| ||||||||| | ||||||||||||| | |||||| | |||||| ||| |||| ||||||| |
|
|
| T |
13284724 |
ttcggtggtttctcgacctttttggctttggccaacttatgtaggtcgttccatcgaagaaacatccttttagaattttct--tttaagtttcatagcat |
13284821 |
T |
|
| Q |
101 |
ttcttttgtaacggtttacctta-cgctcttttagagctcattttgaaacttttt--gtgtaaaccgcccattagttagccccatgaaatgctatgtttg |
197 |
Q |
| |
|
||||||||| ||||||| || |||||||| ||||| ||||||| || |||| |||||||||||||||||| | ||| |||||||||||| || | |
|
|
| T |
13284822 |
cccttttgtaatggtttacttttgcgctcttt-agagcccattttggaatttttatcgtgtaaaccgcccattagctggccttatgaaatgctatattgg |
13284920 |
T |
|
| Q |
198 |
aatttatcttttcgaattactc |
219 |
Q |
| |
|
|| || |||||||||||||||| |
|
|
| T |
13284921 |
aacttttcttttcgaattactc |
13284942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 127890 - 128117
Alignment:
| Q |
2 |
ttcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaag-aacctcccttttgaagttttctagtttctgtttatagcat |
100 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| ||||||||| |||||||| |||| || ||| ||| ||| ||||||| ||||||||| |||||| |
|
|
| T |
127890 |
ttcgatggtttctcgacctttttgggtttggccaacttatgtaggtccttccattgaaggaaaatccttttagaa-ttttctaatttctgtttgtagcat |
127988 |
T |
|
| Q |
101 |
ttcttttgtaacggtttaccttacgctcttttagagctcattttgaaa-ctt-tttgtgtaaaccgcccattagttagccccatgaaatgctatgtttga |
198 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||||||||||||| || ||| |||||||||||| |||||||||| ||| |||||||||||||||||| |
|
|
| T |
127989 |
ttcttttgtaatggtttactttgcgctcttttagagctcatttttaagtcttgtttgtgtaaaccacccattagttggccttatgaaatgctatgtttga |
128088 |
T |
|
| Q |
199 |
atttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
|||| |||||| ||||||||||||||||| |
|
|
| T |
128089 |
atttgtcttttggaattactcttgtatga |
128117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 38737 - 38526
Alignment:
| Q |
2 |
ttcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaag-aacctcccttttgaagttttctagtttct-gtttatagca |
99 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| ||||||||| | ||||||||||| || ||| ||| ||| ||||||| ||||| |||| ||||| |
|
|
| T |
38737 |
ttcgatggtttctcgacctttttgggtttggccaacttatgtaggtcattccatcgaaggaaaatccttttagaa-ttttctaatttcttgtttgtagca |
38639 |
T |
|
| Q |
100 |
tttcttttgtaacggtttaccttacgctcttttagagctcattttgaaa-ct-ttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttg |
197 |
Q |
| |
|
|||||||||||| ||||||| || |||||||||||||| ||||||||| || |||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
38638 |
tttcttttgtaatggtttactttgcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggccttatgaaatgctatgtttg |
38539 |
T |
|
| Q |
198 |
aatttatcttttc |
210 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
38538 |
aatttgtcttttc |
38526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 19230 - 19003
Alignment:
| Q |
2 |
ttcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaag-aacctcccttttgaagttttctagtttct-gtttatagca |
99 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| ||||||||| | ||||||||||| || ||| ||| ||| ||||||| ||||| |||| ||||| |
|
|
| T |
19230 |
ttcgatggtttctcgacctttttgggtttggccaacttatgtaggtcattccatcgaaggaaaatccttttagaa-ttttctaatttcttgtttgtagca |
19132 |
T |
|
| Q |
100 |
tttcttttgtaacggtttaccttacgctcttttagagctcattttgaaa-ct-ttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttg |
197 |
Q |
| |
|
|||||||||| | ||| ||| || ||||||||||| || ||||||||| || |||||||||||||| ||||||||| ||| ||||||||||||||||| |
|
|
| T |
19131 |
tttcttttgtcatggtctactttgcgctcttttag-gcccattttgaagtctcttttgtgtaaaccgtccattagttggccttatgaaatgctatgtttg |
19033 |
T |
|
| Q |
198 |
aatttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
|
|
| T |
19032 |
aatttgtcttttcgaattactcttgtatga |
19003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 10157754 - 10157528
Alignment:
| Q |
2 |
ttcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaacctcccttttgaagttttctagtttctgtttatagcatt |
101 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||| ||||||||| | ||||||||||||| | |||| | ||||||| |||| ||| ||||||| |
|
|
| T |
10157754 |
ttcgatggtttctcgacctttttggctttggccaacttatgtaggtcattccatcgaagaaaaatcattttagaattttctaatttccttttgtagcatt |
10157655 |
T |
|
| Q |
102 |
tcttttgtaacggtttaccttacgctcttttagagctcattttgaaactt--tttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaa |
199 |
Q |
| |
|
|||||||||| ||||||| || |||||||| ||||| ||||||||| || ||||||||||||||||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
10157654 |
tcttttgtaatggtttactttgcgctcttt-agagcccattttgaagtttattttgtgtaaaccgcccattagttggccttatgaaatgccatgtttgaa |
10157556 |
T |
|
| Q |
200 |
tttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
|| |||||||||||||||||||||||| |
|
|
| T |
10157555 |
cttttcttttcgaattactcttgtatga |
10157528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 7360879 - 7361019
Alignment:
| Q |
85 |
tttctgtttatagcatttcttttgtaacggtttaccttacgctcttttagagctcattttgaaactttttgtgtaaaccgcccattagttagccccatga |
184 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| | ||||||||||||||| ||||||||| |||||||||||||||||||||||| || |||| |
|
|
| T |
7360879 |
tttctgtttgtagcatttcttttgtaatggtttacttcgcgctcttttagagcttattttgaaa--ttttgtgtaaaccgcccattagttggcttaatga |
7360976 |
T |
|
| Q |
185 |
aatgctatgtttgaatttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7360977 |
aatgctatgtttgggtttatcttttcgaattactcttgtatga |
7361019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 14688877 - 14689017
Alignment:
| Q |
85 |
tttctgtttatagcatttcttttgtaacggtttaccttacgctctttt-agagctcattttgaaactttttgtgtaaaccgcccattagttagccccatg |
183 |
Q |
| |
|
||||||||| |||||||||||| |||| ||||||| || |||||||| |||| | ||||||||| ||||||||||||||||||| |||| |||||||| |
|
|
| T |
14688877 |
tttctgtttgtagcatttcttt-gtaatggtttactttgtgctctttttagagtttattttgaaa--ttttgtgtaaaccgcccatcagttggccccatg |
14688973 |
T |
|
| Q |
184 |
aaatgctatgtttgaatttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14688974 |
aaatgctatgtttgaatttatcttttcgaattactcttgtatga |
14689017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 227
Target Start/End: Complemental strand, 10786908 - 10786775
Alignment:
| Q |
92 |
ttatagcatttcttttgtaacggtttacctta-cgctcttttagagctcattttgaaactttttgtgtaaaccgcccattagttagc-cccatgaaatgc |
189 |
Q |
| |
|
|||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
10786908 |
ttatagcatttcttttgtaatggtttacttttgcgctcttttagagcttattttgaaac--tttgtgtaaaccgcccattagttggctttaatgaaatgc |
10786811 |
T |
|
| Q |
190 |
tatgtttgaatttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
||||||| || | | |||||||||||||||||||||| |
|
|
| T |
10786810 |
tatgttt--atgtttattttcgaattactcttgtatga |
10786775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 7360813 - 7360874
Alignment:
| Q |
1 |
attcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaa |
62 |
Q |
| |
|
||||||||||||||||| || || || |||||||| ||||||||| | ||||||||||||| |
|
|
| T |
7360813 |
attcgatggttcctcgatctctttggctttggccaacttatgtaggactttccatcgaagaa |
7360874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 91 - 227
Target Start/End: Original strand, 41375837 - 41375971
Alignment:
| Q |
91 |
tttatagcatttcttttgtaacggtttacctta-cgctcttttagagctcattttgaaactttttgtgtaaaccgcccattagttagccccatgaaatgc |
189 |
Q |
| |
|
||||||||||||||||||||| ||||||| || ||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
41375837 |
tttatagcatttcttttgtaatggtttacttttgcgctcttctagagcttattttgaaacttt--gtgtaaaccgcccattagttggcctaatggaatgc |
41375934 |
T |
|
| Q |
190 |
tatgtttgaatttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
41375935 |
tatgtttgagtttat-ttttcgaattactcttgtatga |
41375971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 22080798 - 22080737
Alignment:
| Q |
1 |
attcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaa |
62 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
22080798 |
attcgatggttcctcgatctttttggatttggccagcttatgtagggctttccatcgaagaa |
22080737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 19030526 - 19030753
Alignment:
| Q |
5 |
gatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaacc-tcccttttgaagttttct----agtttctgtttatagca |
99 |
Q |
| |
|
||||||| ||||||||||| || |||||||| ||||||||| | ||||||||||||| | |||||| | |||||| |||||| ||| ||||| |
|
|
| T |
19030526 |
gatggtttctcgacctttttggctttggccaacttatgtaggtcattccatcgaagaaaaattccttttagaattttcttttaagtttcattttgtagca |
19030625 |
T |
|
| Q |
100 |
tttcttttgtaacggtttaccttacgctcttttagagctcattttgaaact--ttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttg |
197 |
Q |
| |
|
|||||||||||| ||||||| || |||||||| ||||| ||||||| || | |||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
19030626 |
tttcttttgtaatggtttactttgcgctcttt-agagcccattttggaattccttttgtgtaaaccgcccattagttggccttatgaaatgctatgtttg |
19030724 |
T |
|
| Q |
198 |
aatttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
|| || |||||||||||||||| ||||||| |
|
|
| T |
19030725 |
aactt-tcttttcgaattactcctgtatga |
19030753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 227
Target Start/End: Complemental strand, 21515322 - 21515173
Alignment:
| Q |
78 |
tttctagtttctgtttatagcatttcttttgtaacggtttaccttacgctcttttagagctcattttgaaact--ttttgtgtaaaccgcccattagtta |
175 |
Q |
| |
|
|||| ||||||| ||| ||||||||||||||||| |||||| || ||||| || |||||||||||||| | ||| ||||||||||||||||||| |
|
|
| T |
21515322 |
tttcaagtttct-tttgtagcatttcttttgtaatggtttattttgcgctccttgcgagctcattttgaagatcctttcatgtaaaccgcccattagttg |
21515224 |
T |
|
| Q |
176 |
gccccatgaaatgctatgtttgaatttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
21515223 |
gccttgtgaaatgctatgtttgaattt-tcttttcgaattactctcgtatga |
21515173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 35811 - 35597
Alignment:
| Q |
2 |
ttcgatggttcctcgaccttttcgggtttggccagattatgtagggccttccatcgaagaacctcccttttgaagttttctagtttctgtttatagcatt |
101 |
Q |
| |
|
|||| ||||| ||||||||||| || |||||||| ||||||||| | ||||||||||||| |||||| | ||||||| |||| ||| ||||||| |
|
|
| T |
35811 |
ttcggtggtttctcgacctttttggctttggccaacttatgtaggtcattccatcgaagaaaaatccttttagaattttctaatttccttttgtagcatt |
35712 |
T |
|
| Q |
102 |
tcttttgtaacggtttaccttacgctcttttagagctcattttgaaact-ttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaat |
200 |
Q |
| |
|
|||||||||| |||||| || ||||| |||||||| ||||||| || | ||| |||| | |||||||||||| ||| ||||||||||| ||| ||| |
|
|
| T |
35711 |
tcttttgtaatggtttattttgcgctc-tttagagcccattttggaattcctttttgtacaacgcccattagttggccttatgaaatgctacgttggaac |
35613 |
T |
|
| Q |
201 |
ttatcttttcgaatta |
216 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
35612 |
ttttcttttcgaatta |
35597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 1729692 - 1729592
Alignment:
| Q |
124 |
cgctcttttagagctcattttgaaactttttgtgtaaaccgcccattagttagccccatgaaatgctatgtttgaatttatcttttcgaattactcttgt |
223 |
Q |
| |
|
||||||| ||||||| ||||||||||||| ||||||||| |||||||||| ||| ||| |||||||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
1729692 |
cgctcttctagagcttattttgaaacttt--gtgtaaaccacccattagttggcctaatggaatgctatgtttgagtttat-tttttgaattactcttgt |
1729596 |
T |
|
| Q |
224 |
atga |
227 |
Q |
| |
|
|||| |
|
|
| T |
1729595 |
atga |
1729592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 122288 - 122358
Alignment:
| Q |
156 |
tgtaaaccgcccattagttagccccatgaaatgctatgtttgaatttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
||||| || |||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
122288 |
tgtaagccacccattagttggccttatgaaatgctatgtttgaattt-tcttttcgaattactcttgtatga |
122358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0241
Description:
Target: scaffold0241; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 19367 - 19322
Alignment:
| Q |
181 |
atgaaatgctatgtttgaatttatcttttcgaattactcttgtatga |
227 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
19367 |
atgaaatgctatgtttaaattt-tcttttcgaattactcttgcatga |
19322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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