View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_42 (Length: 407)
Name: NF9795A_low_42
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 396
Target Start/End: Original strand, 35859738 - 35860121
Alignment:
| Q |
13 |
gatggacatcaattcgggttggaacaaaaccatgactaggaaggtggtgatggtcaaacttatgagcatgaacatgaccataaggtggccatgaatcaaa |
112 |
Q |
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| T |
35859738 |
gatgaacatcaattcgggttggaacaaaaccatgactaggaaggtggtgatggtcaaacttatgagcatgagcatgaccataaagtggccatggatcaaa |
35859837 |
T |
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| Q |
113 |
aacctgagcatgatggaaacgatgagttgtcctttcctgaacaaaaccatgagttggtcctatcggagaacaatgatttgactgttttagaaagccaagg |
212 |
Q |
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| T |
35859838 |
aacctgagcatgatggaaacgatgagttgtcctttcctgaacaaaaccatgagttggtcctatcggagaacaatgatttgactgtttcagaaagccaagg |
35859937 |
T |
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| Q |
213 |
atttaatgagagcatggacctggctgtggttcagaatcccgaaatgagcattgagtctgccaatgacatggttgtttatcagtcacagtatatgctttct |
312 |
Q |
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| T |
35859938 |
atttaatgagagcatggacctggctgtggttcagaatcccgaaatgagcatcgagtctgccaatgacatggttgtttatcagtcacagtatatgctttct |
35860037 |
T |
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| Q |
313 |
tctacacctcatgttgttcaggctcgtacagttgatgtgattccaacttatgaattgtcggtaggccaagaatttcctgatgtc |
396 |
Q |
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| T |
35860038 |
tctacacctcatgtagttcaggctcgtacagttgatgtgattccaacttatgaattgtcggtaggccaagaatttcctaatgtc |
35860121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 146 - 396
Target Start/End: Original strand, 35868055 - 35868302
Alignment:
| Q |
146 |
ttcctgaacaaaaccatgagttggtcctatcggagaacaatgatttgactgttttagaaagccaaggatttaatgagagcatggacctggctgtggttca |
245 |
Q |
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| T |
35868055 |
ttcctggacaaaaccatgatctggtcata---gagaacaataatctaaatgtttttgaaaaccaaggatttgatgagaacatggacctggctgtgattca |
35868151 |
T |
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| Q |
246 |
gaatcccgaaatgagcattgagtctgccaatgacatggttgtttatcagtcacagtatatgctttcttctacacctcatgttgttcaggctcgtacagtt |
345 |
Q |
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| T |
35868152 |
gcaccctgagatgggcgctgattctgacaatgatatgagtatgcaacagtcacagtttatgctttcttctgaatcccatgtaattcaggctcgtacactt |
35868251 |
T |
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| Q |
346 |
gatgtgattccaacttatgaattgtcggtaggccaagaatttcctgatgtc |
396 |
Q |
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| T |
35868252 |
gctgtaagtccaacttatgaactgacagtgggccaagaattccctgatgtc |
35868302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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