View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_423 (Length: 223)
Name: NF9795A_low_423
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_423 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 558352 - 558568
Alignment:
| Q |
8 |
ttggtgttcccacaaaattacattacattttcaagtagnnnnnnnn-ttacattttcaagtaacaaaatcttgtatttcagtctaggtttaaactaaagg |
106 |
Q |
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| T |
558352 |
ttggtgttcccacaaaattacattacattttcatgtagaaaaaaaaattacattttcaagtaacaaaatcttgtatttcagtctaggtttaaactaaagg |
558451 |
T |
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| Q |
107 |
acatgcgcaactctcctaaagcaactcaaaatgttgcaaaaagaatcatctctaaaggttcattagaagagtcaacaaatgtttttgttgttgacataaa |
206 |
Q |
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| T |
558452 |
acatgctcaactctcctaaagcaactcaaaatgttgcaaaaagaatcatcaataaaggttcattagaagagtcaacaaatgtttttgttgttgacataaa |
558551 |
T |
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| Q |
207 |
agagaaaattacacata |
223 |
Q |
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||||||||||||||||| |
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| T |
558552 |
agagaaaattacacata |
558568 |
T |
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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 560064 - 560132
Alignment:
| Q |
58 |
attttcaagtaacaaaatcttgtatttcagtctaggtttaaactaaaggacatgcgcaactctcctaaag |
127 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||| ||||| | ||||| || ||||||||||| |
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| T |
560064 |
attttcaagtaacaaagtcttgtatttcaatctaggtttaagctaaa-gccatgctcagctctcctaaag |
560132 |
T |
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