View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_428 (Length: 221)
Name: NF9795A_low_428
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_428 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 43411010 - 43410806
Alignment:
| Q |
24 |
acagacagacacaacacattcagatga---gaagttgtaagctagctag----gaggatggactgctgctgctgctgttgcggaaagtgtttggaagatt |
116 |
Q |
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| T |
43411010 |
acagacagacacaacacattcagatgatcagaagttgtaagctagctagctaggaggatggactgctgctgctgctgttgcggaaagtgtttggaagatt |
43410911 |
T |
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| Q |
117 |
gagaggggaagcttgaaaaagagagagtctaatggtacgtgtgtgagatgatgtgtgcaagtctttacattcttcaagatcagcatcacatgataacaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43410910 |
gagaggggaagcttgaaaaagagagagtctaatggtacgtgtgtgagatgatgtgtgcaagtctttacattcttcaagatcagcatcacatgataacaca |
43410811 |
T |
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| Q |
217 |
accca |
221 |
Q |
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||||| |
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| T |
43410810 |
accca |
43410806 |
T |
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