View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_429 (Length: 221)
Name: NF9795A_low_429
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_429 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 22877848 - 22877653
Alignment:
| Q |
9 |
atggacatcaataaattacttttctttgtaatagttgagtaaataatttaagtagaatggaattagtcgacttttagccactggctattaaaaccatctc |
108 |
Q |
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| T |
22877848 |
atggacatcaataaattacttttctttgtgatagttgagtaaataatttaagtagaatggaattagtcgacttttagccactggctattaaaaccatctc |
22877749 |
T |
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| Q |
109 |
ctacaattgcagtatgagtacaaagatactaacagtactgttaatgctcacatcacatcacataaaacaagagagggtagtaccgaatgtgatgtc |
204 |
Q |
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| T |
22877748 |
ctacaattgcagtatgagtacaaagatactaacagtactgttaatgctcacatcacatcacataaaacaagagagggtagtaccgaatgtgatgtc |
22877653 |
T |
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Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 41650650 - 41650458
Alignment:
| Q |
9 |
atggacatcaataaattacttttctttgtaatagttgagtaaataatttaagtagaatggaattagtcgacttttagccactggctattaaaaccatctc |
108 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||| ||||| |||||| |||||| |||||||||||||| ||||||||||| ||| |
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| T |
41650650 |
atggacatcaataatttacttttctttgtaatacttgagtaaataattgaagtaagatggaactagtcgccttttagccactggttattaaaaccacctc |
41650551 |
T |
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| Q |
109 |
ctacaattgcagtatgagtacaaagatactaacagtactgttaatgctcacatcacatcacataaaacaagagagggtagtaccgaatgtgatgtc |
204 |
Q |
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|||||| ||||| |||| |||||||||||| ||||| |||||||||||||||||| | ||||||||||||||||| |||| |||||||||||| |
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| T |
41650550 |
ctacaactgcagcatgaatacaaagatacttacagttttgttaatgctcacatcacgt---ataaaacaagagagggtggtactgaatgtgatgtc |
41650458 |
T |
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