View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_431 (Length: 219)
Name: NF9795A_low_431
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_431 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 30810322 - 30810502
Alignment:
| Q |
20 |
cacaatctcccctcacattaaatgtgtatgtctacccctcttcatctactatattatata--aatacatagttaccttcaaatttcttttacactataaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30810322 |
cacaatctcccctcacattaaatgtgtatgtctacctctcttcatctactatattatatataaatacaaagttaccttcaaatttcttttacactataaa |
30810421 |
T |
|
| Q |
118 |
aactct--tcaacatttatttacttattctatcttcaatattcattagtccttcttttaacaaatgattatagtataatat |
196 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30810422 |
aactctattcaacatttatttacttattctatcttcaatattgattagtccttcttttaacaaatgattataatataatat |
30810502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 30820124 - 30820182
Alignment:
| Q |
138 |
cttattctatcttcaatattcattagtccttcttttaacaaatgattatagtataatat |
196 |
Q |
| |
|
||||||| | |||||||||| ||| |||||||||||||||||||| |||| |||||||| |
|
|
| T |
30820124 |
cttattcgaacttcaatattgattggtccttcttttaacaaatgactataatataatat |
30820182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 30814920 - 30814976
Alignment:
| Q |
139 |
ttattctatcttcaatattcattagtccttcttttaacaaatgattatagtataatat |
196 |
Q |
| |
|
||||| ||| ||||||||| ||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
30814920 |
ttattttattttcaatattgattggtc-ttcttttaacaaatgattataatataatat |
30814976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University