View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_436 (Length: 218)
Name: NF9795A_low_436
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_436 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 38483841 - 38483684
Alignment:
| Q |
41 |
atcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacctgtcttcccaacacgatttccatcgaaaaaac |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38483841 |
atcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacccgtcttcccaacacgatttccatcgaaaaaac |
38483742 |
T |
|
| Q |
141 |
tactcccgatatcaataggccatttcaatttctcaaaacacctcttactccaaaaata |
198 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38483741 |
tactcccaatatcaataggccatttcaatttctcaaaacacctcttactccaaaaata |
38483684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 30118241 - 30118163
Alignment:
| Q |
43 |
caacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacctgtcttcccaaca |
121 |
Q |
| |
|
|||||| | ||||||||| |||||||||| ||||| |||||||||||| ||| | |||||||| || ||||| |||||| |
|
|
| T |
30118241 |
caacataatccaaagcctgtcaaaactccgaaacagattccaaaacgatctctgctcaacaaatccggtcttaccaaca |
30118163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 30118138 - 30118074
Alignment:
| Q |
134 |
aaaaaactactcccgatatcaataggccatttcaatttctcaaaacacctcttactccaaaaata |
198 |
Q |
| |
|
|||||| ||||||| | |||| ||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
30118138 |
aaaaaattactcccaacatcaggaggccatttcatcttctcaaaacacctcctactccaaaaata |
30118074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University