View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_437 (Length: 217)
Name: NF9795A_low_437
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_437 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 25802106 - 25801904
Alignment:
| Q |
15 |
atggacatccgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgtttcttctctgtttgtttgt |
114 |
Q |
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| T |
25802106 |
atggaaattcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgtttcttctctttttgtttgt |
25802007 |
T |
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| Q |
115 |
gtgatattgcatatgtaatggtaactgttgttatgtatttataattggaaggggcgtgatttggacttgtgctggtttgtgggtaattaggtaatttgaa |
214 |
Q |
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| T |
25802006 |
gtgatattgcatatgtaatggtaactgttgttatgtatttataattggaaggggcatgatttggacttgtgctggtttgagggtaattaggtaatttgaa |
25801907 |
T |
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| Q |
215 |
agt |
217 |
Q |
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||| |
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| T |
25801906 |
agt |
25801904 |
T |
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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 25816199 - 25816102
Alignment:
| Q |
15 |
atggacatccgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgtttcttctctgtttgttt |
112 |
Q |
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| T |
25816199 |
atggaaattcgttgtgttcgaatcttagtttgtgttttgggtggctgaaatgtgatatctcgttgtatttcattgttctgtttcttctctatttgttt |
25816102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 112425 - 112616
Alignment:
| Q |
15 |
atggacatccgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgtatttcattgttctgtttcttctctgtttgtttgt |
114 |
Q |
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| T |
112425 |
atggaaattcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgtgatatctcactgtatttcattgttctg-----------tttgtttgt |
112513 |
T |
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| Q |
115 |
gtgatattgcatatgtaatggtaactgttgttatgtatttataattggaaggggcgtgatttggacttgtgctggtttgtgggtaattaggtaatttgaa |
214 |
Q |
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| T |
112514 |
gtgatattgcatatgtaatggtaactgttgttatgtatttataattggaaggggcgtgatttggacttgtgttggtttgagggtaattaagtaatttgaa |
112613 |
T |
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