View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_44 (Length: 399)
Name: NF9795A_low_44
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 24138530 - 24138164
Alignment:
| Q |
18 |
catcaaagcaagagcatgtggcatgatttcctgataaaccatgnnnnnnncttctgtagttgctgtttcaagcttttgttgaataaatcggcttccatat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24138530 |
catcaaagcaagagcatgtggcatgatttcctgataaaccatgtttttttcttctgtagttgctgtttcaagcttttgttgaataaatcggcttccatat |
24138431 |
T |
|
| Q |
118 |
tgatcggcactgccaacgattgtaaattaagtcaatttaacttttaagacgacnnnnnnnnt---gcatcaacagacaaaaattgaacaaatttacctga |
214 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
24138430 |
tgatcggcactgccaacgatcgtaaattaagtcaagttaacttttaagacgacaaaaaaaaaaaagcatcaaccgacaaaaattgaacaaatttacctga |
24138331 |
T |
|
| Q |
215 |
attcaacaacatgtccggcaatttcagagagctcaaaacacttggctttattgcttttaaactcttccagcagagaagaagcaaagctttcatccatatt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24138330 |
attcaacaacatgtccggcaatttcagagagctcaaaacacttggctttattgcttttaaactcttccagcagagaagaagcaaagctttcatccatatt |
24138231 |
T |
|
| Q |
315 |
cccggaatctacatgccaaggtcccatgaccccggctaagttcctcattccagaagcaaaacgcatg |
381 |
Q |
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| T |
24138230 |
cccggaatctacatgccaaggtcccatgaccccggctaagttcctcattccagaagcaaaacgcatg |
24138164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 208 - 380
Target Start/End: Complemental strand, 41720657 - 41720485
Alignment:
| Q |
208 |
tacctgaattcaacaacatgtccggcaatttcagagagctcaaaacacttggctttattgcttttaaactcttccagcagagaagaagcaaagctttcat |
307 |
Q |
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| T |
41720657 |
tacctgaattcaacaacatgaccagaaatttcagaaagctcaaagcactttgttttattgcttttaaactcttccaacagagacgaagcaaagttttcat |
41720558 |
T |
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| Q |
308 |
ccatattcccggaatctacatgccaaggtcccatgaccccggctaagttcctcattccagaagcaaaacgcat |
380 |
Q |
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| T |
41720557 |
ctacgtttacagcatctaggtgccatggtgccatgaccccagctacattcctcattccagaagcaaaatgcat |
41720485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 41720868 - 41720753
Alignment:
| Q |
18 |
catcaaagcaagagcatgtggcatgatttcctgataaaccatgnnnnnnncttctgtagttgctgtttcaagcttttgttgaataaatcggcttccatat |
117 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
41720868 |
catcaaagcaagagcatgtggcgtgatttcctgataaaccatattcttttcttcagtggttgctgtttcaagcttttgttgaataaaccggctaccatat |
41720769 |
T |
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| Q |
118 |
tgatcggcactgccaa |
133 |
Q |
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||||| |||||||||| |
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| T |
41720768 |
tgatcagcactgccaa |
41720753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 310
Target Start/End: Complemental strand, 34413804 - 34413703
Alignment:
| Q |
209 |
acctgaattcaacaacatgtccggcaatttcagagagctcaaaacacttggctttattgcttttaaactcttccagcagagaagaagcaaagctttcatc |
308 |
Q |
| |
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||||||| ||||||||||| || |||||||| || || |||||||| |||| |||||||||||| || || || |||| ||||||| |||| | ||||| |
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| T |
34413804 |
acctgaactcaacaacatgcccagcaatttctgaaagttcaaaacatttggttttattgcttttgaattcatcaagcaacgaagaaggaaagttctcatc |
34413705 |
T |
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| Q |
309 |
ca |
310 |
Q |
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|| |
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|
| T |
34413704 |
ca |
34413703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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