View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_445 (Length: 214)
Name: NF9795A_low_445
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_445 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 32 - 192
Target Start/End: Complemental strand, 11688711 - 11688553
Alignment:
| Q |
32 |
cttggagctcacgatacttacttcaaatagttgggttggcagtgtaaaagtgttgcactggcatattgaggacatgtacattctttctctctccgtttct |
131 |
Q |
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| T |
11688711 |
cttggagctcacgatactgagttcaaatagttgggttggcaatgtaaaagtgttgcactggcat--tgaggacatgtacattctttctctctccgtgtct |
11688614 |
T |
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| Q |
132 |
tcatgctcctcaacacaacgacattataccttcattaacattttattttcttaaatctttg |
192 |
Q |
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| T |
11688613 |
tcatgctcctcaacacaacgacattataccttcattaacattttattttcttaaatctttg |
11688553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 11691927 - 11691803
Alignment:
| Q |
32 |
cttggagctcacgatacttacttcaaatagttgggttggcagtgtaaaagtgttgcactggc--atattgaggacatgtacattctttctctctccgttt |
129 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | |
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| T |
11691927 |
cttggagctcacgatacttagttcaaatatttgggttggcagtgtaaaagtgttgcactggcatatattgaggaca--tacattctttctctctccgtgt |
11691830 |
T |
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| Q |
130 |
cttcatgctcctcaacacaacgacatt |
156 |
Q |
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| T |
11691829 |
cttcatgttcctcaacacaacaacatt |
11691803 |
T |
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