View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_45 (Length: 398)
Name: NF9795A_low_45
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 387
Target Start/End: Complemental strand, 33662664 - 33662295
Alignment:
| Q |
20 |
cttaggactatcatatccgcagaattgttgctttcattattcaaattaaggtagatatagttgtttaatgtgccccnnnnnnn--gagatagttgtttat |
117 |
Q |
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| T |
33662664 |
cttaggactatcatatccgcagaattgttgctttcattattcaaattaaggtagatatagttgtttaatgtaccccaaaaaaaaagagatagttgtttat |
33662565 |
T |
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| Q |
118 |
cattttttaattaatgagttgtttaaaccttaacttcaaacattttagcattttatcgttagaaattcatctcttatagataaattagtggagtgtccga |
217 |
Q |
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| T |
33662564 |
cattttttaattaatgagttgtttaaactttaacttcaaacattttagcattttatcgttagaaattcatctcttatagataaattagtggagtgtccga |
33662465 |
T |
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| Q |
218 |
gtttaaacctcgactatacatattacaatgaattgtccctatcaattagttaatatcacatcgacgaatgtcgaattttattgacggcaaagaagttccg |
317 |
Q |
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| T |
33662464 |
gttcaaacctcgactatacatattacaatgaattgtccctatcaattagttaatatcacatcgacgaatgtcgaattttattgacggcaaagaagttccg |
33662365 |
T |
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| Q |
318 |
gaaaaaccatattcttttcttcctagaacaaattaaaatcacaaccatatgatactaaattcttattcat |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33662364 |
gaaaaaccatattcttttcttcctagaacaaattaaaatcacaaccatatgatactaaattcttattcat |
33662295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 33672130 - 33672083
Alignment:
| Q |
40 |
agaattgttgctttcattattcaaattaaggtagatatagttgtttaa |
87 |
Q |
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||||||||| |||||||||||| | ||||||||||||||||||||||| |
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| T |
33672130 |
agaattgtttctttcattattccatttaaggtagatatagttgtttaa |
33672083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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