View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_452 (Length: 212)
Name: NF9795A_low_452
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_452 |
 | |
|
| [»] scaffold0945 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 24546261 - 24546470
Alignment:
| Q |
1 |
agaaagaacattggggagcaccccattaatagaaggtgcatcttgtacgttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
24546261 |
agaaagaacattggggagcaccccattaatagaaggtgcatcttgtaggttggtgcaatctgtcgccttgaaagataccagttgcttttccaaatcaaac |
24546360 |
T |
|
| Q |
101 |
ccaatcaaataattggactgagcatggtttccataaatgccatattcgttactaaaagtgctggtgaatgcaaagcagaaaataccatcttgtaccggaa |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24546361 |
ccaatcaaataatttgactgagcatggtttccataaatgccatattcgttactaaaagtgctggtgaatgcaaagcaaaaaataccatcttgtaccggaa |
24546460 |
T |
|
| Q |
201 |
tgaagatttg |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
24546461 |
tgaagatttg |
24546470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 50 - 212
Target Start/End: Original strand, 24538936 - 24539095
Alignment:
| Q |
50 |
ttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataattggactgagcatggtttccataaatgccatattcgt |
149 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||| |||| |||||||||| || ||||||| | |
|
|
| T |
24538936 |
ttggtgcaatctgttgccttgaaagaaaccacctgcctttccaaatcaaacccaatcaaatagtttgactgggcatagtttccataagtgacatattctt |
24539035 |
T |
|
| Q |
150 |
tactaaaagtgctggtgaatgcaaagcagaaaataccatcttgtaccggaatgaagatttgag |
212 |
Q |
| |
|
| | |||| | || ||| ||||||||| || ||||||||||||||||||| ||||||| |
|
|
| T |
24539036 |
catt---agtgtcgaagactgcgaagcagaaattatcatcttgtaccggaatgaacatttgag |
24539095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 583 - 405
Alignment:
| Q |
34 |
aggtgcatcttgtacgttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataattggactgagcatggtttcca |
133 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| ||| | ||||| |
|
|
| T |
583 |
aggtgcatcttgtaagttggtgcaatctgtggccttgaaagaaaccacttgcttttccaaatcaaacccaatcaaataatttgactgcacatagcttcca |
484 |
T |
|
| Q |
134 |
taaatgccatattcgttactaaaagtgctggtgaatgcaaagcagaaaataccatcttgtaccggaatgaagatttgag |
212 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
483 |
taagtgccatattcgttactaaaagagctggtgaatgcaaagcagaaaataccatattgtaccggaatgaagatttgag |
405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 1667880 - 1667944
Alignment:
| Q |
50 |
ttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataatt |
114 |
Q |
| |
|
||||| |||||||| | ||||||||| |||||||| || ||||||||||| || || |||||||| |
|
|
| T |
1667880 |
ttggtacaatctgttggcttgaaagagaccacttgtctatccaaatcaaatcctattaaataatt |
1667944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University