View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_458 (Length: 208)

Name: NF9795A_low_458
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_458
NF9795A_low_458
[»] chr8 (3 HSPs)
chr8 (39-199)||(24569925-24570092)
chr8 (69-130)||(15238977-15239038)
chr8 (66-130)||(31288516-31288580)
[»] chr2 (4 HSPs)
chr2 (41-148)||(26292556-26292662)
chr2 (69-140)||(36357277-36357348)
chr2 (89-134)||(29986297-29986342)
chr2 (69-130)||(45621740-45621801)
[»] chr7 (12 HSPs)
chr7 (90-196)||(18775587-18775693)
chr7 (73-132)||(23587815-23587874)
chr7 (73-130)||(21227373-21227430)
chr7 (69-130)||(21912338-21912399)
chr7 (69-140)||(670181-670251)
chr7 (82-141)||(11608575-11608634)
chr7 (69-132)||(18495546-18495609)
chr7 (71-130)||(21885014-21885073)
chr7 (69-130)||(9890364-9890425)
chr7 (81-134)||(12864231-12864284)
chr7 (69-130)||(20174760-20174821)
chr7 (97-141)||(5779666-5779710)
[»] chr4 (8 HSPs)
chr4 (45-181)||(12286197-12286342)
chr4 (69-130)||(19900758-19900819)
chr4 (80-178)||(819047-819154)
chr4 (69-109)||(11521073-11521113)
chr4 (69-128)||(20315179-20315238)
chr4 (69-130)||(9737368-9737429)
chr4 (69-110)||(11700452-11700493)
chr4 (69-141)||(8011578-8011649)
[»] chr1 (8 HSPs)
chr1 (69-139)||(13207887-13207957)
chr1 (84-137)||(27451653-27451706)
chr1 (69-141)||(10825108-10825180)
chr1 (145-189)||(30096051-30096095)
chr1 (93-135)||(10064449-10064491)
chr1 (69-139)||(13202629-13202699)
chr1 (69-130)||(24267640-24267701)
chr1 (73-129)||(6501412-6501468)
[»] chr5 (7 HSPs)
chr5 (69-134)||(18750703-18750768)
chr5 (69-130)||(27921252-27921313)
chr5 (69-141)||(8365511-8365583)
chr5 (69-132)||(15470118-15470181)
chr5 (69-134)||(15492720-15492785)
chr5 (69-120)||(29263450-29263501)
chr5 (77-130)||(32417205-32417258)
[»] chr3 (4 HSPs)
chr3 (69-141)||(25781517-25781588)
chr3 (69-130)||(25756854-25756914)
chr3 (84-141)||(25780241-25780298)
chr3 (69-109)||(24933022-24933062)
[»] chr6 (6 HSPs)
chr6 (69-132)||(33652628-33652691)
chr6 (69-109)||(9386244-9386284)
chr6 (69-128)||(33655734-33655793)
chr6 (69-110)||(7542834-7542875)
chr6 (69-130)||(9726202-9726263)
chr6 (69-130)||(28585889-28585950)
[»] scaffold0136 (1 HSPs)
scaffold0136 (69-110)||(15344-15385)


Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 24570092 - 24569925
Alignment:
Q  39 agttgagtttgattgcagaaaagcaaatgctttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttggattaaagac 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  24570092 agttgagtttgattgcagaaaagcaaatgctttgattgcagaattttaacggtggttaggattctttgaatcacctatatttctttgttggattaaagac 24569993  T
Q  139 aagcaatta-------tgagataaggtttctatttaagtgatgagtttgtcggattgtgatgtccatc 199  Q
    |||||||||       |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24569992 aagcaattatgagttatgagataaggtttctatttaagtgatgagtttgtcggattgttatgtccatc 24569925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 15238977 - 15239038
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttgga 130  Q
    |||||||||||||| || | || ||||||||||||| ||||| ||| ||||| |||||||||    
T  15238977 tttgattgcagaatgttcgaggcggttaggattctttgaatcccctctatttatttgttgga 15239038  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 31288516 - 31288580
Alignment:
Q  66 tgctttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttgga 130  Q
    ||||||||||| ||||| ||||||| |||||||||| || ||||| ||| |||||  ||||||||    
T  31288516 tgctttgattgtagaatgttagcggcggttaggattatttgaatcccctctatttaattgttgga 31288580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 3e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 26292662 - 26292556
Alignment:
Q  41 ttgagtttgattgcagaaaagcaaatgc-tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttggattaaagaca 139  Q
    |||||||||||| || ||||| ||| |  |||||||||||||||  ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||    
T  26292662 ttgagtttgattacaaaaaagtaaacgagtttgattgcagaatt--agcggtgcttaggattcttcgaatcccctatatttctttgttagattaaagaca 26292565  T
Q  140 agcaattat 148  Q
    | |||||||    
T  26292564 aacaattat 26292556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 36357277 - 36357348
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttggattaaagacaa 140  Q
    |||||||| || || |||| || ||||| ||||||||||||| ||| ||||| |||||||||||||||||||    
T  36357277 tttgattgtaggatgttagtggcggttaagattcttcgaatcccctctatttatttgttggattaaagacaa 36357348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 29986342 - 29986297
Alignment:
Q  89 ggtggttaggattcttcgaatcgcctatatttctttgttggattaa 134  Q
    |||||||| |||| |||||||| ||| |||||||||||||||||||    
T  29986342 ggtggttatgattattcgaatcccctttatttctttgttggattaa 29986297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 45621801 - 45621740
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttgga 130  Q
    |||||||||||||| ||||||| ||||| ||||||| ||||| ||| ||||  |||||||||    
T  45621801 tttgattgcagaatgttagcggcggttaagattctttgaatcccctctattcatttgttgga 45621740  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 196
Target Start/End: Complemental strand, 18775693 - 18775587
Alignment:
Q  90 gtggttaggattcttcgaatcgcctatatttctttgttggattaaagacaagcaattatgagataaggtttctatttaagtgatgagtttgtcggattgt 189  Q
    ||||||||||||||| ||||| ||| ||||||||| ||| ||| |||||||| ||||||||||||| | |||||||||||| ||||||| ||  ||||||    
T  18775693 gtggttaggattctttgaatcccctttatttcttttttgaatttaagacaagtaattatgagataatggttctatttaagtaatgagttcgtgagattgt 18775594  T
Q  190 gatgtcc 196  Q
     ||||||    
T  18775593 tatgtcc 18775587  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 23587815 - 23587874
Alignment:
Q  73 attgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttggatt 132  Q
    |||||||||| |||||||||||||| |||||||||| | ||| ||||| |||||||||||    
T  23587815 attgcagaatgttagcggtggttagaattcttcgaaacccctctatttatttgttggatt 23587874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 21227373 - 21227430
Alignment:
Q  73 attgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttgga 130  Q
    |||||| ||| ||||| ||||||||||||||||||||| ||| ||||| |||||||||    
T  21227373 attgcaaaatattagcagtggttaggattcttcgaatcccctctatttatttgttgga 21227430  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 21912399 - 21912338
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttgga 130  Q
    |||||||||||||| |||||||   ||||||||||||||||  ||||||||| |||||||||    
T  21912399 tttgattgcagaatgttagcggcatttaggattcttcgaataccctatatttatttgttgga 21912338  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 670251 - 670181
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttggattaaagacaa 140  Q
    ||||||| || |||||| |||||||||||||||||| ||||| | | |||||| |||||| |||||||||||    
T  670251 tttgattacataatttt-gcggtggttaggattctttgaatctcgtctatttccttgttgaattaaagacaa 670181  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 11608575 - 11608634
Alignment:
Q  82 ttttagcggtggttaggattcttcgaatcgcctatatttctttgttggattaaagacaag 141  Q
    ||||||||||||||| ||||||||||||  ||| || ||| ||| |||||||||||||||    
T  11608575 ttttagcggtggttaagattcttcgaattccctctacttccttgatggattaaagacaag 11608634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 18495546 - 18495609
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttggatt 132  Q
    |||||||||||||| |||||||  ||||||||||||  |||| ||| ||||| |||||||||||    
T  18495546 tttgattgcagaatgttagcggctgttaggattctttaaatcccctctatttatttgttggatt 18495609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 21885073 - 21885014
Alignment:
Q  71 tgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttgga 130  Q
    ||||||||| || |||||||||||||| |||||| ||||| ||||||| | |||||||||    
T  21885073 tgattgcagcatgttagcggtggttagaattctttgaatcccctatatatatttgttgga 21885014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 9890364 - 9890425
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttgga 130  Q
    |||||||||||||| ||||||| ||||| |||||||| |||| ||| ||||  |||||||||    
T  9890364 tttgattgcagaatcttagcggcggttaagattcttcaaatcccctctattaatttgttgga 9890425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 12864231 - 12864284
Alignment:
Q  81 attttagcggtggttaggattcttcgaatcgcctatatttctttgttggattaa 134  Q
    ||||||| ||||  |||||||||||||||| |||||||||| |||||| |||||    
T  12864231 attttagtggtgaataggattcttcgaatcccctatatttccttgttgaattaa 12864284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 20174760 - 20174821
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttgga 130  Q
    |||||||| ||||| |||| ||| |||||||||||||||||| | | ||||| |||||||||    
T  20174760 tttgattgtagaatgttagtggtcgttaggattcttcgaatcccttctatttatttgttgga 20174821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 5779666 - 5779710
Alignment:
Q  97 ggattcttcgaatcgcctatatttctttgttggattaaagacaag 141  Q
    |||||||| |||||  || ||||||||||||||||||||||||||    
T  5779666 ggattctttgaatcctctctatttctttgttggattaaagacaag 5779710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 181
Target Start/End: Original strand, 12286197 - 12286342
Alignment:
Q  45 gtttgattgcagaaaagcaaatgctttgattgcagaattttagcggtggttaggattcttcgaatcgc-ctatatttctttgttggatt-aaagacaagc 142  Q
    ||||||||||||||||  ||||| ||||||| || |||||||| | | |||| ||||||| ||||| | || |||||| |||||| ||| |||||||||     
T  12286197 gtttgattgcagaaaattaaatggtttgatttcaaaattttagggatcgttaagattctttgaatcccactctatttccttgttgcatttaaagacaaga 12286296  T
Q  143 aattat-------gagataaggtttctatttaagtgatgagtttgt 181  Q
    ||||||       ||||||||| |||||||||||||||||||||||    
T  12286297 aattatcagtaatgagataagggttctatttaagtgatgagtttgt 12286342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 19900758 - 19900819
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttgga 130  Q
    |||||||||| ||| ||||||| ||||||||||||||| ||| ||||||||| |||||||||    
T  19900758 tttgattgcataatgttagcggaggttaggattcttcggatcccctatatttatttgttgga 19900819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 819047 - 819154
Alignment:
Q  80 aattttagcggtggttaggattcttcgaatcgcctatatttct--ttgttggattaaagaca-------agcaattatgagataaggtttctatttaagt 170  Q
    |||||||||||||||||||||| |||||||| ||| | |||||  ||||||||||||| |||       | |||||| ||||||| | ||||||||||||    
T  819047 aattttagcggtggttaggatttttcgaatctcctctctttctccttgttggattaaaaacaaataattatcaattacgagataatggttctatttaagt 819146  T
Q  171 gatgagtt 178  Q
    ||||||||    
T  819147 gatgagtt 819154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 11521113 - 11521073
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaat 109  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  11521113 tttgattgcagaatgttagcggtggttaggattctttgaat 11521073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 20315179 - 20315238
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttg 128  Q
    |||||||||||||| |||| || ||||||||||||| ||||| ||| ||||| |||||||    
T  20315179 tttgattgcagaatgttagtggcggttaggattctttgaatcccctctatttatttgttg 20315238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 9737429 - 9737368
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttgga 130  Q
    |||||||||||||| ||||||| ||||||||||||| ||||  ||| ||||  |||||||||    
T  9737429 tttgattgcagaatgttagcggcggttaggattctttgaatgtcctctattcatttgttgga 9737368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 11700493 - 11700452
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatc 110  Q
    |||||||||||||| ||||||| ||||||||||||| |||||    
T  11700493 tttgattgcagaatgttagcggcggttaggattctttgaatc 11700452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 8011649 - 8011578
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttggattaaagacaag 141  Q
    |||| ||||||||| ||||||  ||||||||||||||||||  ||| |||||  ||||| |||||||||||||    
T  8011649 tttggttgcagaatgttagcgacggttaggattcttcgaataccctttatttacttgtt-gattaaagacaag 8011578  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 13207957 - 13207887
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttggattaaagaca 139  Q
    ||||||||||||||||||| |  || || ||||||||||||| ||| |||||| |||||||||||||||||    
T  13207957 tttgattgcagaattttagtgtcggctatgattcttcgaatctcctctatttccttgttggattaaagaca 13207887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 27451706 - 27451653
Alignment:
Q  84 ttagcggtggttaggattcttcgaatcgcctatatttctttgttggattaaaga 137  Q
    |||||||||||||||| ||||| |||| |||||||||  |||||||||||||||    
T  27451706 ttagcggtggttaggaatcttcaaatcccctatattttcttgttggattaaaga 27451653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 10825108 - 10825180
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttggattaaagacaag 141  Q
    ||||||||||||||  |||||  ||||||||||||||||||   || || ||||||||||||||||| |||||    
T  10825108 tttgattgcagaatgctagcgacggttaggattcttcgaattttctctacttctttgttggattaaatacaag 10825180  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 30096051 - 30096095
Alignment:
Q  145 ttatgagataaggtttctatttaagtgatgagtttgtcggattgt 189  Q
    ||||||||||||| |||||||||||||||||||| || |||||||    
T  30096051 ttatgagataaggattctatttaagtgatgagttcgtgggattgt 30096095  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 10064491 - 10064449
Alignment:
Q  93 gttaggattcttcgaatcgcctatatttctttgttggattaaa 135  Q
    |||||||||||||||||| ||||||||  ||||||||||||||    
T  10064491 gttaggattcttcgaatcccctatattcatttgttggattaaa 10064449  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 13202699 - 13202629
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttggattaaagaca 139  Q
    |||||||| ||||||||||| |    ||| |||||||||||| ||||||||| | ||||||||||||||||    
T  13202699 tttgattgtagaattttagcagctactagaattcttcgaatcccctatatttttatgttggattaaagaca 13202629  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 24267701 - 24267640
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttgga 130  Q
    |||||||||||||| ||||||  ||||||||||||| ||||| ||| ||||  |||||||||    
T  24267701 tttgattgcagaatgttagcgacggttaggattctttgaatcccctctattaatttgttgga 24267640  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 6501468 - 6501412
Alignment:
Q  73 attgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttgg 129  Q
    |||||||||| ||||||| ||||| ||||||||||||| ||| |||||  |||||||    
T  6501468 attgcagaatgttagcggcggttatgattcttcgaatcccctctatttagttgttgg 6501412  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 18750703 - 18750768
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttggattaa 134  Q
    |||||||||||||||||||||| |  ||||||||||| |||| ||| |||||| ||||||||||||    
T  18750703 tttgattgcagaattttagcggcgtctaggattcttcaaatcccctctatttccttgttggattaa 18750768  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 27921313 - 27921252
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttgga 130  Q
    |||||||||||||| ||||| | ||||||||||||||||||| ||| ||||| |||||||||    
T  27921313 tttgattgcagaatgttagcagaggttaggattcttcgaatcccctttatttatttgttgga 27921252  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 8365583 - 8365511
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttggattaaagacaag 141  Q
    |||||| ||| ||||||||||  ||||||||||||||||||| ||| || ||| || ||||||||||||||||    
T  8365583 tttgatcgcaaaattttagcgacggttaggattcttcgaatctcctctaattccttattggattaaagacaag 8365511  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 15470118 - 15470181
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttggatt 132  Q
    |||||||||| ||| ||||||| ||||||||||||| ||||| ||| ||||| |||||||||||    
T  15470118 tttgattgcaaaatattagcggcggttaggattctttgaatcccctctatttatttgttggatt 15470181  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 15492785 - 15492720
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttggattaa 134  Q
    |||||||||||||| |||| ||||||||||||||||| |||| | | ||||| | |||||||||||    
T  15492785 tttgattgcagaatgttagtggtggttaggattcttcaaatctcatctatttatatgttggattaa 15492720  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 29263501 - 29263450
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatattt 120  Q
    |||||||| | ||| ||||||||||||||||||||||||||| ||| |||||    
T  29263501 tttgattgtataatgttagcggtggttaggattcttcgaatcccctctattt 29263450  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 32417258 - 32417205
Alignment:
Q  77 cagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttgga 130  Q
    |||||| |||| |||||||||||||||||||||| ||| |||||  ||||||||    
T  32417258 cagaatgttagtggtggttaggattcttcgaatcccctctatttacttgttgga 32417205  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 25781588 - 25781517
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttggattaaagacaag 141  Q
    |||||||||||||| ||||||| ||||||||||| | ||||| ||| |||||| ||||||| |||||||||||    
T  25781588 tttgattgcagaatgttagcggcggttaggattcctagaatctcct-tatttccttgttggtttaaagacaag 25781517  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 25756854 - 25756914
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttgga 130  Q
    |||||||||| ||| |||||||||||||||| ||||||||||  || ||||| |||||||||    
T  25756854 tttgattgcaaaatgttagcggtggttagga-tcttcgaatcctctctatttatttgttgga 25756914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 25780298 - 25780241
Alignment:
Q  84 ttagcggtggttaggattcttcgaatcgcctatatttctttgttggattaaagacaag 141  Q
    |||| ||||||||| |||||||||||| | | |||||  |||||||||||||||||||    
T  25780298 ttagtggtggttagaattcttcgaatcccgtctattttcttgttggattaaagacaag 25780241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 24933062 - 24933022
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaat 109  Q
    |||||||||||||| ||||||| ||||||||||| ||||||    
T  24933062 tttgattgcagaatgttagcggcggttaggattcatcgaat 24933022  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 33652691 - 33652628
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttggatt 132  Q
    |||||||||||||| ||| ||| ||||||||||||||||||| ||| |||||  ||||||||||    
T  33652691 tttgattgcagaatcttaacggcggttaggattcttcgaatctcctctatttacttgttggatt 33652628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 9386244 - 9386284
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaat 109  Q
    |||||||||||||| ||||||| ||||||||||||||||||    
T  9386244 tttgattgcagaatgttagcggcggttaggattcttcgaat 9386284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 33655793 - 33655734
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttg 128  Q
    |||||||||||||| |||| ||| |||||||||||||||||| ||| ||||  |||||||    
T  33655793 tttgattgcagaatgttagtggtagttaggattcttcgaatcccctctattcatttgttg 33655734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 7542875 - 7542834
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatc 110  Q
    |||||||||||||| ||||||| ||||| |||||||||||||    
T  7542875 tttgattgcagaatgttagcggcggttatgattcttcgaatc 7542834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 9726202 - 9726263
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttgga 130  Q
    |||||||||||||| |||| || ||||||||||||| ||||  ||| ||||| |||||||||    
T  9726202 tttgattgcagaatgttagtggcggttaggattctttgaattccctctatttatttgttgga 9726263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 28585950 - 28585889
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatcgcctatatttctttgttgga 130  Q
    |||||||| ||||| ||||||| |||||||||||||| |||| ||| |||||  ||||||||    
T  28585950 tttgattgtagaatgttagcggcggttaggattcttcaaatcccctctatttaattgttgga 28585889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 15385 - 15344
Alignment:
Q  69 tttgattgcagaattttagcggtggttaggattcttcgaatc 110  Q
    |||||||||||||| ||||||  |||||||||||||||||||    
T  15385 tttgattgcagaatgttagcgacggttaggattcttcgaatc 15344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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