View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_49 (Length: 394)
Name: NF9795A_low_49
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 21358117 - 21357908
Alignment:
| Q |
1 |
tcacacagattgcttatatcatattattacataattagttgaagatgtcacattcaaaagttgttcattgtatttcaattgtggttaatacctgaaatga |
100 |
Q |
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| T |
21358117 |
tcacacagattgcttatatcatattattacataattagttgaagatgtcacattcaaaagttgttcattgtatttcaattgtggttaatacctgaaatga |
21358018 |
T |
|
| Q |
101 |
aagatacagggatgtcagttgcataaagtattttataaaagtcttgtgatgttctgaatgtttcacattattgaaaagaaacccatgttatatatttaaa |
200 |
Q |
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|||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21358017 |
aagatacagggatgtcggttgcataaagtattgtctaaaagtcttgtgatgttctgaatgtttcacattattgaaaagaaacccatgttatatatttaaa |
21357918 |
T |
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| Q |
201 |
agaggaaagg |
210 |
Q |
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|||||||||| |
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| T |
21357917 |
agaggaaagg |
21357908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 236 - 381
Target Start/End: Complemental strand, 21357881 - 21357736
Alignment:
| Q |
236 |
ggaaaggtcttgaaaagagtttataaagagagacctgtcgcctttcaagtcggttttgtaaggacgagttagacccgatgtaaaaaacttgatacacaat |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21357881 |
ggaaaggtcttgaaaagagtttataaagagagacctgtcgcctttcaagtcggttttgtaaggacgagttagacccgatataaaaaacttgatacacaat |
21357782 |
T |
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| Q |
336 |
gctgagtcagtttagtgtgcacttggctttaatacttgatgtccat |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21357781 |
gctgagtcagtttagtgtgcacttggctttaatacttggtgtccat |
21357736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 878162 - 878195
Alignment:
| Q |
288 |
gttttgtaaggacgagttagacccgatgtaaaaa |
321 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
878162 |
gttttgtaaggacgagttagacccgatataaaaa |
878195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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