View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_53 (Length: 382)
Name: NF9795A_low_53
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 331
Target Start/End: Original strand, 53001087 - 53001405
Alignment:
| Q |
13 |
acatcattgaaagcctacggttatagctttccctaatttatagcaaaaacaagctagnnnnnnnctgacctacaactctacttgttttgcttattttaga |
112 |
Q |
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| T |
53001087 |
acatcattgaaagcctacggttatagctttccctaatttatagcaaaaacaagctagaaaaaaactgacctacaactctacttgttttgcttattttaga |
53001186 |
T |
|
| Q |
113 |
aattcaaaaacacaagttagcagcaaccaacttaaattatttgggactaatgtgtttttatatttaactaaagatggaactaatatatgatcaaatagct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53001187 |
aattcaaaaacacaagttagcagcaaccaacttaaattatttgggactaatgtgtttttatatttaactaaagatggaactaatatatgatcaaatagct |
53001286 |
T |
|
| Q |
213 |
atcattcagtattggttcaacaataacaataaatgatagacatacacatacactttaattaatcaaatacatctggaacaaacaacaataatggatcgaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
53001287 |
atcattcagtattggttcaacaataacaataaatgttagacatacacatacactttaattaatcaaatacatctggaacaaacaacaataatggattgat |
53001386 |
T |
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| Q |
313 |
caaacatgtttataccgtt |
331 |
Q |
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||||||||||||||||||| |
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| T |
53001387 |
caaacatgtttataccgtt |
53001405 |
T |
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