View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_56 (Length: 380)
Name: NF9795A_low_56
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 3428984 - 3428650
Alignment:
| Q |
1 |
aatccaagtcaagtggtagatagttggatccttttccgttgttagcaaaatctcagtcgttgaattaatctaatatatctgcgatcaatgctattattcg |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||| ||| |
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| T |
3428984 |
aatccaagtcaagtgatagatagttggatccttttccgttattagcgaaatctcagtcgttgaattaatctaatatttatgcgatcaatgttattagtcg |
3428885 |
T |
|
| Q |
101 |
cgtagaattgaaattagagattaagtgtgcatgagttatgagaagaatttttatttttaatctaccatcattcggtacactactttttggtctctttata |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3428884 |
cgtagaattgaaattagagattaagtgtggatgagttatgagaagaatttttatttttaatctaccatcatttggtacactactttttggtctctttata |
3428785 |
T |
|
| Q |
201 |
tggtgatagggattggaattttaggagttttcctctcatttcaaggaccagccaattgcatcttcttcttgaatgtgctctaatttttcgcttgtctcga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3428784 |
tggtgatagggattggaattttaggagttttcctctcattccaaggaccagccaattgcatcttcttcttgaatgtgctctaatttttcgcttgtctcga |
3428685 |
T |
|
| Q |
301 |
aaagcataactagat-ttttaatatgagcataact |
334 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| |
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|
| T |
3428684 |
aaagcataactagattttttattatgagcataact |
3428650 |
T |
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