View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_60 (Length: 372)
Name: NF9795A_low_60
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_60 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 20489569 - 20489905
Alignment:
| Q |
1 |
gcttcctctttaggttcatttcataacaaaggacttttaattttcatcatattaaatcactattagtgggtaatatttcaatttccaaccactggcagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20489569 |
gcttcctctttaggttcatttcataacaaaggacttttaattttcatcatattaaatcactattagtgggtaatatttcaatttccaaccactggcagat |
20489668 |
T |
|
| Q |
101 |
tcaagtaattagctgtaatagtagaaatatagattagtataattaatattaatagatagaaaatgtcttgtcatgtaaatcttcaaatttttctttaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20489669 |
tcaagtaattagctgtaatagtagaaatatagattagtataattaatattaatagatagaaaatgtcttgtcatgtaaatcttcaaatttttctttaagt |
20489768 |
T |
|
| Q |
201 |
atcatcaaggaaggtacgtcatatgtcatgaagtcccaccaatggagcaaaggataatggtagagtagccttttccagtgcaaacaactttaagaactac |
300 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20489769 |
aaaatcaaggaag----gtcatatgtcatgaagtcccaccaatggagcaaaggataatggtagagtagccttttccagtgcaaacaactttaagaactac |
20489864 |
T |
|
| Q |
301 |
acatgcatacttagtataatcaactttaatcaacatagtat |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20489865 |
acatgcatacttagtataatcaactttaatcaacatagtat |
20489905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University