View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_61 (Length: 371)
Name: NF9795A_low_61
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 8699989 - 8699769
Alignment:
| Q |
3 |
tttgtaagcggttcaggcagcacctgaaattttattgcagtttttacttgatnnnnnnnnnngttttaaataagtattttctattctatcctagaatact |
102 |
Q |
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| T |
8699989 |
tttgtaagcggttcaagcagctcttgaaattttattgcagtttttacttgataaaaaaaaaagttttaaataagtattttctattctatcctagaatact |
8699890 |
T |
|
| Q |
103 |
taatgagatggtgaggaatctcctacatgtcttgatttacaatctagaagagttttgtgattcattgtgatgccttacccgacttaaggaattagtctat |
202 |
Q |
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||||||||||||||||||||||||| | |||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
8699889 |
taatgagatggtgaggaatctcctagaggtcttgatttcaaatctagaagagttttgtaattcattgtgatgccttacccgatttaaggaattagtttat |
8699790 |
T |
|
| Q |
203 |
acactttgcacaaagataccc |
223 |
Q |
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|||||||||||| |||||||| |
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| T |
8699789 |
acactttgcacagagataccc |
8699769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 14382892 - 14382932
Alignment:
| Q |
74 |
aagtattttctattctatcctagaatacttaatgagatggt |
114 |
Q |
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| T |
14382892 |
aagtattttctattctatcctaaaatacttaaagagatggt |
14382932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 52773580 - 52773527
Alignment:
| Q |
1 |
actttgtaagcggttcaggcagcacctgaaattttattgcagtttttacttgat |
54 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
52773580 |
actttgtaagcggttgaggcagctcctgaaattttattgcagtttttacttgat |
52773527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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