View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_62 (Length: 369)

Name: NF9795A_low_62
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_62
NF9795A_low_62
[»] chr2 (3 HSPs)
chr2 (13-369)||(32361770-32362125)
chr2 (261-296)||(24983120-24983155)
chr2 (245-293)||(41320007-41320055)
[»] chr5 (2 HSPs)
chr5 (198-298)||(22778091-22778190)
chr5 (247-295)||(33766481-33766529)
[»] chr4 (3 HSPs)
chr4 (168-287)||(43416591-43416709)
chr4 (168-294)||(34553018-34553143)
chr4 (245-281)||(54157292-54157328)
[»] chr3 (5 HSPs)
chr3 (245-298)||(32982261-32982314)
chr3 (210-295)||(47607189-47607273)
chr3 (245-289)||(23310502-23310546)
chr3 (247-293)||(33639658-33639704)
chr3 (245-298)||(37065960-37066013)
[»] chr1 (4 HSPs)
chr1 (245-298)||(17238481-17238534)
chr1 (245-295)||(6632090-6632140)
chr1 (245-287)||(19990280-19990322)
chr1 (245-286)||(16073325-16073366)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 369
Target Start/End: Original strand, 32361770 - 32362125
Alignment:
Q  13 gttggaggtggtggggacaagggagggtagccagggaagaggcaattgaaatacaacgctgaattttttggtctgaaggtatggatcgtnnnnnnntgcc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||       ||||    
T  32361770 gttggaggtggtggggacaagggagggtagccagggaagaggcaactgaaatacaacgctgaattttttggtctgaaggtatggatcgtaaaaaaatgcc 32361869  T
Q  113 ttggatttttacagaacaattgaaagatgctgaaggaacaatcaatggttgatgaggtgtgcaatattgttaggtgcgcaatcagataattaactaagac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32361870 ttggatttttacagaacaattgaaagatgctgaaggaacaatcaatggttgatgaggtgtggaatattgttaggtgcgcaatcagataattaactaagac 32361969  T
Q  213 cattagattaaaacaaaatagatggtagtgattttggattaagtctatagacttactcttggagtcgatatatccatcctctatatttttaacattttgt 312  Q
    ||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32361970 cattagattaaaacaaaatagatggtagtga-tttggaaaaagtctatagacttactcttggagtcgatatatccatcctctatatttttaacattttgt 32362068  T
Q  313 ggaacggaaatacaaacctgaacactttggaatatcccaaacagcgattgatgttga 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32362069 ggaacggaaatacaaacctgaacactttggaatatcccaaacagcgattgatgttga 32362125  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 24983155 - 24983120
Alignment:
Q  261 agacttactcttggagtcgatatatccatcctctat 296  Q
    ||||||||||||||||||||||||||| ||||||||    
T  24983155 agacttactcttggagtcgatatatccctcctctat 24983120  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 41320055 - 41320007
Alignment:
Q  245 tttggattaagtctatagacttactcttggagtcgatatatccatcctc 293  Q
    |||||| |||||||||| |||||||||||||||| | |||||| |||||    
T  41320055 tttggagtaagtctataaacttactcttggagtcaaaatatccctcctc 41320007  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 298
Target Start/End: Original strand, 22778091 - 22778190
Alignment:
Q  198 ataattaactaagaccattagattaaaacaaaatagatggtagtgattttggattaagtctatagacttactcttggagtcgatatatccatcctctata 297  Q
    |||||||| ||||||  || |||||||||||||| ||||| | |||||| ||| ||||||||| |||||||||||| |||| |||||||| |||| ||||    
T  22778091 ataattaattaagactgttggattaaaacaaaatggatggcaatgattt-ggagtaagtctattgacttactcttgaagtcaatatatccctcctatata 22778189  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 33766529 - 33766481
Alignment:
Q  247 tggattaagtctatagacttactcttggagtcgatatatccatcctcta 295  Q
    |||| ||| ||| ||||||||||||||||||| |||||||| |||||||    
T  33766529 tggagtaactctttagacttactcttggagtcaatatatccctcctcta 33766481  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 43416709 - 43416591
Alignment:
Q  168 ggtgtgcaatattgttaggtgcgcaatcagataattaactaagaccattagattaaaacaaaatagatggtagtgattttggattaagtctatagactta 267  Q
    |||||| ||| || || ||||| ||| || |||||||| | ||||  ||||||||||| ||||| ||||||||||| | |||| ||| ||||| || |||    
T  43416709 ggtgtggaatcttattcggtgcacaagcatataattaatttagactgttagattaaaataaaatggatggtagtga-tctggagtaactctattgagtta 43416611  T
Q  268 ctcttggagtcgatatatcc 287  Q
    ||||||||||| ||||||||    
T  43416610 ctcttggagtcaatatatcc 43416591  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 294
Target Start/End: Complemental strand, 34553143 - 34553018
Alignment:
Q  168 ggtgtgcaatattgttaggtgcgcaatcagataattaactaagaccattagattaaaacaaaatagatggtagtgattttggattaagtctatagactta 267  Q
    |||||| ||| ||||| ||||| |||  | ||||||||| ||| |  |||||||||||  |||| ||||||||||| |||||| ||| || || || |||    
T  34553143 ggtgtggaatcttgttcggtgcacaagaatataattaaccaaggctgttagattaaaatgaaatggatggtagtga-tttggagtaactccattgagtta 34553045  T
Q  268 ctcttggagtcgatatatccatcctct 294  Q
    ||||||||||| |||||||| ||||||    
T  34553044 ctcttggagtcaatatatccctcctct 34553018  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 54157328 - 54157292
Alignment:
Q  245 tttggattaagtctatagacttactcttggagtcgat 281  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  54157328 tttggagtaagtctttagacttactcttggagtcgat 54157292  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 32982314 - 32982261
Alignment:
Q  245 tttggattaagtctatagacttactcttggagtcgatatatccatcctctatat 298  Q
    |||||| ||||||||||||||||||||||||||| | |||||||| || |||||    
T  32982314 tttggagtaagtctatagacttactcttggagtcaaaatatccatgctatatat 32982261  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 295
Target Start/End: Complemental strand, 47607273 - 47607189
Alignment:
Q  210 gaccattagattaaaacaaaatagatggtagtgattttggattaagtctatagacttactcttggagtcgatatatccatcctcta 295  Q
    |||||||||||||||| ||||  || |||| |||||| ||| ||| ||||| ||||||||||| ||||| |||||||| |||||||    
T  47607273 gaccattagattaaaataaaacggagggtaatgattt-ggagtaactctattgacttactcttcgagtcaatatatccctcctcta 47607189  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 23310546 - 23310502
Alignment:
Q  245 tttggattaagtctatagacttactcttggagtcgatatatccat 289  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||    
T  23310546 tttggagtaagtctatagacttactcttggagtcaaaatatccat 23310502  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 293
Target Start/End: Original strand, 33639658 - 33639704
Alignment:
Q  247 tggattaagtctatagacttactcttggagtcgatatatccatcctc 293  Q
    |||| ||||||| ||||||||||||||||||| |||||||| |||||    
T  33639658 tggagtaagtctttagacttactcttggagtcaatatatccctcctc 33639704  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 37066013 - 37065960
Alignment:
Q  245 tttggattaagtctatagacttactcttggagtcgatatatccatcctctatat 298  Q
    |||||| ||||| || |||||||||||||||||| | |||||| ||||||||||    
T  37066013 tttggagtaagtttagagacttactcttggagtcaaaatatccctcctctatat 37065960  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 17238481 - 17238534
Alignment:
Q  245 tttggattaagtctatagacttactcttggagtcgatatatccatcctctatat 298  Q
    |||||| |||||||||| |||||||||||||||| | |||||| ||||||||||    
T  17238481 tttggagtaagtctataaacttactcttggagtcaaaatatccctcctctatat 17238534  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 6632090 - 6632140
Alignment:
Q  245 tttggattaagtctatagacttactcttggagtcgatatatccatcctcta 295  Q
    |||||| |||||||||| |||||||||||||||| | |||||| |||||||    
T  6632090 tttggagtaagtctataaacttactcttggagtctaaatatccctcctcta 6632140  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 19990322 - 19990280
Alignment:
Q  245 tttggattaagtctatagacttactcttggagtcgatatatcc 287  Q
    |||||| ||||||| ||||||||||||||||||| ||||||||    
T  19990322 tttggagtaagtctttagacttactcttggagtcaatatatcc 19990280  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 16073325 - 16073366
Alignment:
Q  245 tttggattaagtctatagacttactcttggagtcgatatatc 286  Q
    |||||| ||||||| ||||||||||||||||||| |||||||    
T  16073325 tttggaataagtctttagacttactcttggagtcaatatatc 16073366  T

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