View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_65 (Length: 364)
Name: NF9795A_low_65
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_65 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: scaffold0421 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 13389 - 13270
Alignment:
| Q |
41 |
tgttggatctattcttttctttattatcattatttacaaagttaaattttttaatatttccatgccatgtcattggtggtagaaaagggtgtaccaaaag |
140 |
Q |
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| T |
13389 |
tgttggatctattcttttctttattatcattctttacatagttaaattttttaatatttccatgccatgtcatcggtggtagaaaagggtgtaccaaaag |
13290 |
T |
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| Q |
141 |
agtggtacatgaatcttttt |
160 |
Q |
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| T |
13289 |
agtggtacatgaatcttttt |
13270 |
T |
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Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 42211920 - 42212019
Alignment:
| Q |
163 |
actttttgtgacgtgcactttctctgtccttttctacggttttcattttctctcaaatctaaacccttcttctcacactttttgcaactgtcacgtgtgg |
262 |
Q |
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| T |
42211920 |
actttttgtgacgtgcactttctctgtccttttctacggttttcattttctctcaaatctaaacccttcttctcacactttttgcaactgtcacgtgtgg |
42212019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 46 - 153
Target Start/End: Original strand, 47345444 - 47345551
Alignment:
| Q |
46 |
gatctattcttttctttattatcattatttacaaagttaaattttttaatatttccatgccatgtcattggtggtagaaaagggtgtaccaaaagagtgg |
145 |
Q |
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| T |
47345444 |
gatctattcttttcttttttatcattctttacaaagttaaattgtttaatatttccatgtcatgtcatcagtgctataaaagggtgtaccaaaagagtaa |
47345543 |
T |
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| Q |
146 |
tacatgaa |
153 |
Q |
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| T |
47345544 |
tacatgaa |
47345551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 3798110 - 3798071
Alignment:
| Q |
46 |
gatctattcttttctttattatcattatttacaaagttaa |
85 |
Q |
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| T |
3798110 |
gatctattcttttcttttttatcattctttacaaagttaa |
3798071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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