View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_73 (Length: 358)
Name: NF9795A_low_73
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_73 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 119 - 344
Target Start/End: Complemental strand, 29090222 - 29089996
Alignment:
| Q |
119 |
gatatcgaatcataacatcatttgcttgggcattatccaccgttatcgttactatcttaccatacaacccc-aatccctccaataagtttcaacatattt |
217 |
Q |
| |
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||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||| |
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| T |
29090222 |
gatatcgaatcataacatcatttgccttggcattatccaccgttaccgttaatatcttaccatacaacccccaatccctcaaataagtgtcaacatattt |
29090123 |
T |
|
| Q |
218 |
acccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgannnnnnngtgtagcttcaattcatgatcaacaaaatgaacggtcaaactcatg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29090122 |
acccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgattttcttgtgcagcttcaattcacgatcaacaaaatgaacggtcaaactcatg |
29090023 |
T |
|
| Q |
318 |
taatttaagttttgatttgatgtccat |
344 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
29090022 |
taatttaagttttgatttgatgtccat |
29089996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 29090460 - 29090363
Alignment:
| Q |
16 |
agtacaacagcacctttgtatggaattttctcatcagaagcacacatcatgaacttttccaatctagatggtgaggatttgacccatttaacagcatg |
113 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
29090460 |
agtacaacaacacctttttatggaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttgacccatttaacagcatg |
29090363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 119 - 344
Target Start/End: Complemental strand, 5935927 - 5935701
Alignment:
| Q |
119 |
gatatcgaatcataacatcatttgcttgggcattatccaccgttatcgttactatcttaccatacaacccc-aatccctccaataagtttcaacatattt |
217 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||| |
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| T |
5935927 |
gatatcgaatcataacatcatttgccttggcattatccaccgttatcgttaatatcttaccatacaacccccaatccctcaaataagtgtcaacatattt |
5935828 |
T |
|
| Q |
218 |
acccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgannnnnnngtgtagcttcaattcatgatcaacaaaatgaacggtcaaactcatg |
317 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| | ||||||||| |
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|
| T |
5935827 |
acccaacatgtctcccgtgtgacccatgatttggcaaaagttgatgattttcttgtgcagcttcaattcacgatcaacaaaatgaacgatgaaactcatg |
5935728 |
T |
|
| Q |
318 |
taatttaagttttgatttgatgtccat |
344 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
5935727 |
taatttaagttttgatttgatgtccat |
5935701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 119 - 344
Target Start/End: Original strand, 5933537 - 5933763
Alignment:
| Q |
119 |
gatatcgaatcataacatcatttgcttgggcattatccaccgttatcgttactatcttaccatacaa-ccccaatccctccaataagtttcaacatattt |
217 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||| |
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|
| T |
5933537 |
gatatcgaatcataacatcatttgccttggcattatccaccgttaccgttaatatcttaccatacaagccccaatccctcaaataagtgtcaacatattt |
5933636 |
T |
|
| Q |
218 |
acccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgannnnnnngtgtagcttcaattcatgatcaacaaaatgaacggtcaaactcatg |
317 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
5933637 |
acccaacatgtctcccatgtgacctatgatttggcaaaagttgatgattttcttgtgcagcttcaattcacgatcaacaaaatgaacggtcaaactcatg |
5933736 |
T |
|
| Q |
318 |
taatttaagttttgatttgatgtccat |
344 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
5933737 |
taatttaagttttgatttgatgtccat |
5933763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 120 - 337
Target Start/End: Original strand, 4316544 - 4316753
Alignment:
| Q |
120 |
atatcgaatcataacatcatttgcttgggcattatccaccgttatcgttactatcttaccatacaa-ccccaatccctccaataagtttcaacatattta |
218 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||| |||||||||||| |
|
|
| T |
4316544 |
atattgaatcataacatcatttgccttggcattatccaccgttaccgttaatatcttaccatacaacccccaatccctcaaataagtgtcaacatattta |
4316643 |
T |
|
| Q |
219 |
cccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgannnnnnngtgtagcttcaattcatgatcaacaaaatgaacggtcaaactcatgt |
318 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
4316644 |
cccaacatgtct---------cctgtgatttggcaaaagttgatgattttcttgtgcagcttcaattcacgatcaacaaaatgaacggtcaaactcatgt |
4316734 |
T |
|
| Q |
319 |
aatttaagttttgatttga |
337 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
4316735 |
aatttaagttttgatttga |
4316753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 4316305 - 4316402
Alignment:
| Q |
16 |
agtacaacagcacctttgtatggaattttctcatcagaagcacacatcatgaacttttccaatctagatggtgaggatttgacccatttaacagcatg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
4316305 |
agtacaacagcacctttgtatggaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttgacccatttaacagcatg |
4316402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 5933299 - 5933396
Alignment:
| Q |
16 |
agtacaacagcacctttgtatggaattttctcatcagaagcacacatcatgaacttttccaatctagatggtgaggatttgacccatttaacagcatg |
113 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
5933299 |
agtacaacaacacctttgtatggaattttctcatcagaagcacatctcataaacttttccaatctagatggcgaggatttaacccatttaacagcatg |
5933396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 5936165 - 5936068
Alignment:
| Q |
16 |
agtacaacagcacctttgtatggaattttctcatcagaagcacacatcatgaacttttccaatctagatggtgaggatttgacccatttaacagcatg |
113 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||| |||||||||||| |||| |
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|
| T |
5936165 |
agtacaacaacacctttgtatggaattttctcatcagaagcacatctcatgaacttttccaatctagatagcgaggatttaacccatttaacaacatg |
5936068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 119 - 344
Target Start/End: Complemental strand, 16046131 - 16045905
Alignment:
| Q |
119 |
gatatcgaatcataacatcatttgcttgggcattatccaccgttatcgttactatcttaccatacaaccc-caatccctccaataagtttcaacatattt |
217 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| ||||||||| ||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||| |
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|
| T |
16046131 |
gatatcgaatcataacatcatttgtcttggcattacccaccgttaccgttaatatcttaccatacaaccctcaatccctcaaataagtgtcaacatattt |
16046032 |
T |
|
| Q |
218 |
acccaacatgtctcccgtgtgacccgtgatttggcaaaagttgatgannnnnnngtgtagcttcaattcatgatcaacaaaatgaacggtcaaactcatg |
317 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
16046031 |
acccaacatgtctcccgtgtgacttgtgatttggcaaaagttgatgattttcttgtgcagcttcaattcacgatcagcaaaatgaacggtcaaactcatg |
16045932 |
T |
|
| Q |
318 |
taatttaagttttgatttgatgtccat |
344 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
16045931 |
taatttaagttttgatttgatgtccat |
16045905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 16046369 - 16046272
Alignment:
| Q |
16 |
agtacaacagcacctttgtatggaattttctcatcagaagcacacatcatgaacttttccaatctagatggtgaggatttgacccatttaacagcatg |
113 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
16046369 |
agtacaacaacacctttgtatgaaattttctcatcagaagcacatatcatgaacttttccaatctagatggcgaggatttgacccatttaactgcatg |
16046272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 121 - 262
Target Start/End: Complemental strand, 10143060 - 10142918
Alignment:
| Q |
121 |
tatcgaatcataacatcatttgcttgggcattatccaccgttatcgttactatcttaccatacaaccc-caatccctccaataagtttcaacatatttac |
219 |
Q |
| |
|
|||||||||||||| ||||||| | | |||| |||||||||| ||||| || ||||| | |||||| |||| ||| |||| || ||||||||||||| |
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|
| T |
10143060 |
tatcgaatcataacttcatttgacttgacattgtccaccgttaccgttaagattttaccgttcaaccctcaattccttaaatatgtgtcaacatatttac |
10142961 |
T |
|
| Q |
220 |
ccaacatgtctcccgtgtgacccgtgatttggcaaaagttgat |
262 |
Q |
| |
|
||||||| ||| | ||||||||| ||||||| ||||||||||| |
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|
| T |
10142960 |
ccaacatatcttcggtgtgacccatgatttgacaaaagttgat |
10142918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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