View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_75 (Length: 357)

Name: NF9795A_low_75
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_75
NF9795A_low_75
[»] chr8 (4 HSPs)
chr8 (4-278)||(15821943-15822217)
chr8 (143-240)||(34866639-34866736)
chr8 (137-224)||(37987529-37987616)
chr8 (171-277)||(34389556-34389664)
[»] chr4 (3 HSPs)
chr4 (130-278)||(16501141-16501292)
chr4 (203-277)||(4305080-4305154)
chr4 (171-277)||(30963873-30963981)
[»] chr2 (4 HSPs)
chr2 (171-278)||(31902926-31903035)
chr2 (168-224)||(2062249-2062305)
chr2 (176-277)||(29486398-29486501)
chr2 (143-277)||(39339374-39339510)
[»] chr1 (1 HSPs)
chr1 (126-237)||(13512973-13513083)
[»] chr6 (1 HSPs)
chr6 (143-277)||(16510831-16510967)
[»] chr7 (4 HSPs)
chr7 (156-277)||(38305655-38305778)
chr7 (126-159)||(3420368-3420401)
chr7 (176-240)||(38484990-38485054)
chr7 (143-277)||(47326413-47326549)
[»] chr3 (2 HSPs)
chr3 (168-240)||(1653498-1653570)
chr3 (143-224)||(19175885-19175966)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 4 - 278
Target Start/End: Complemental strand, 15822217 - 15821943
Alignment:
Q  4 gagtttcgtgttgttgttgtgaaggcggaagctgttaggtttttgggtctatgcggtggagactggtggcggcgaggtgtggtggggtgatgcggataca 103  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||    
T  15822217 gagtttcgtgttgttgttgtgaaggaggaagctgttaggtttttgggtctatgtggtggagactggtggcagtgaggtgtggtggggtgatgcggataca 15822118  T
Q  104 atggtgataatgtttcggttgtgtggtggtggtgccttttccttgtcaccagcggccgcctatatacgatctgggttgagtttccgtttcaaacaggcat 203  Q
     |||||||| ||||||||||||||||||||||||| ||||| ||||||||| ||| || || |||||||||| |||||||||||||||||||||||||||    
T  15822117 gtggtgatactgtttcggttgtgtggtggtggtgcattttcattgtcaccaacggtcgactttatacgatctaggttgagtttccgtttcaaacaggcat 15822018  T
Q  204 cgctgcccgggttttgttgttcgttttcgtcttcctcgagtcatgtttgtgtggccgtttgtttcttggtgaggc 278  Q
    |||||||| |||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  15822017 cgctgcccaggttttgttgttcggtttcatcttcctcgagtcttgtttgtgtggccgtttgtttcttggtgaggc 15821943  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 34866736 - 34866639
Alignment:
Q  143 tccttgtcaccagcggccgcctatatacgatctgggttgagtttccgtttcaaacaggcatcgctgcccgggttttgttgttcgttttcgtcttcctc 240  Q
    ||||||||||  ||| |||||| | || || |||||||| | ||||| ||||||| ||| |||||||||| ||||||||||| | |||||||||||||    
T  34866736 tccttgtcacaggcgaccgcctttttatgacctgggttgtggttccgcttcaaaccggcgtcgctgcccgtgttttgttgttggatttcgtcttcctc 34866639  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 37987616 - 37987529
Alignment:
Q  137 gccttttccttgtcaccagcggccgcctatatacgatctgggttgagtttccgtttcaaacaggcatcgctgcccgggttttgttgtt 224  Q
    ||||| ||||||||||| ||||  || | | |||||||| ||||||||||||| |||| || ||| |||||||||| ||| |||||||    
T  37987616 gccttctccttgtcaccggcgggtgcgtgtttacgatctaggttgagtttccgcttcagaccggcgtcgctgcccgtgttatgttgtt 37987529  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 277
Target Start/End: Complemental strand, 34389664 - 34389556
Alignment:
Q  171 gatctgggttgagtttccgtttcaaacaggcatcgctgcccgggttttgttgttcgttttcgtcttcctc--gagtcatgtttgtgtggccgtttgtttc 268  Q
    ||||||||||| | ||||| ||||||| ||| |||||||||| ||||||||||    ||||||| |||||  || | |||||||||| |  | |||||||    
T  34389664 gatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgtggaatttcgtcctcctctagatttatgtttgtgttgttgcttgtttc 34389565  T
Q  269 ttggtgagg 277  Q
    |||||||||    
T  34389564 ttggtgagg 34389556  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 278
Target Start/End: Original strand, 16501141 - 16501292
Alignment:
Q  130 tggtggtgccttttccttgtcaccagcggccgcctatatacgatctgggttgagtttccgtttcaaacaggcatcgctgcccgggttttgttgttcgttt 229  Q
    |||||||||||||||||||||||| ||||||| || |||||||| ||||||| | ||||  ||||||| ||| |||||||||  ||| ||||||| ||||    
T  16501141 tggtggtgccttttccttgtcaccggcggccgtctttatacgatttgggttgtgattccacttcaaaccggcgtcgctgcccatgttgtgttgttggttt 16501240  T
Q  230 tcgtcttcctc--gagtcatgtttgtgtggccgtttg-tttcttggtgaggc 278  Q
    | |||||||||   | |  ||||||||||||||| || ||||||||||||||    
T  16501241 tagtcttcctctaaatttgtgtttgtgtggccgtctgttttcttggtgaggc 16501292  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 4305080 - 4305154
Alignment:
Q  203 tcgctgcccgggttttgttgttcgttttcgtcttcctcgagtcatgtttgtgtggccgtttgtttcttggtgagg 277  Q
    |||||||||| ||||||||||| | ||||||||| || || | |||||||| | ||||||||||||  |||||||    
T  4305080 tcgctgcccgtgttttgttgttggatttcgtcttgctagattaatgtttgtcttgccgtttgtttcaaggtgagg 4305154  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 277
Target Start/End: Original strand, 30963873 - 30963981
Alignment:
Q  171 gatctgggttgagtttccgtttcaaacaggcatcgctgcccgggttttgttgttcgttttcgtcttcctc--gagtcatgtttgtgtggccgtttgtttc 268  Q
    ||||||||||| | ||||  ||||||| ||| ||| |||||| ||||||| ||| | |||||||||||||  || | |||||||||| |  | |||||||    
T  30963873 gatctgggttgtggttccacttcaaaccggcgtcgatgcccgtgttttgtggttggatttcgtcttcctctagatttatgtttgtgttgttgcttgtttc 30963972  T
Q  269 ttggtgagg 277  Q
    |||||||||    
T  30963973 ttggtgagg 30963981  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 31903035 - 31902926
Alignment:
Q  171 gatctgggttgagtttccgtttcaaacaggcatcgctgcccgggttttgttgttcgttttcgtcttcctcgag-tc-atgtttgtgtggccgtttgtttc 268  Q
    ||||| ||||| ||||||| ||||||| ||| |||||||||| ||||||||||| | ||||||||||||| || || ||||| |||| || |||||||||    
T  31903035 gatctaggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgttgggtttcgtcttcctctagatctatgttagtgttgctgtttgtttc 31902936  T
Q  269 ttggtgaggc 278  Q
    ||| ||||||    
T  31902935 ttgctgaggc 31902926  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 2062249 - 2062305
Alignment:
Q  168 tacgatctgggttgagtttccgtttcaaacaggcatcgctgcccgggttttgttgtt 224  Q
    |||||||||||||| ||||||| |||| || ||| |||||||||| |||||||||||    
T  2062249 tacgatctgggttgtgtttccgcttcagaccggcgtcgctgcccgtgttttgttgtt 2062305  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 277
Target Start/End: Original strand, 29486398 - 29486501
Alignment:
Q  176 gggttgagtttccgtttcaaacaggcatcgctgcccgggttttgttgttcgttttcgtcttcctcgagtcat--gtttgtgtggccgtttgtttcttggt 273  Q
    |||||| ||||||| |||| || ||| |||||||||  ||||||||||| | |||||||| ||||  |||||  |||||||| || |||||||||||||     
T  29486398 gggttgtgtttccgcttcagaccggcgtcgctgcccaagttttgttgtttggtttcgtctccctctggtcatgagtttgtgttgctgtttgtttcttgga 29486497  T
Q  274 gagg 277  Q
    ||||    
T  29486498 gagg 29486501  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 39339510 - 39339374
Alignment:
Q  143 tccttgtcaccagcggccgcctatatacgatctgggttgagtttccgtttcaaacaggcatcgctgcccgggttttgttgttcgttttcgtcttcctcga 242  Q
    ||||||||||| |||||||||| | || ||| | ||||| |||| |  ||||||| | | ||||||| || ||||||||||| | |||| |||||||| |    
T  39339510 tccttgtcaccggcggccgcctttctatgattttggttgtgttttcacttcaaaccgacgtcgctgctcgtgttttgttgttggatttcctcttcctcta 39339411  T
Q  243 g-tc-atgtttgtgtggccgtttgtttcttggtgagg 277  Q
    | || || ||||||| || || |||||||||||||||    
T  39339410 gatctatatttgtgttgctgtctgtttcttggtgagg 39339374  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 237
Target Start/End: Original strand, 13512973 - 13513083
Alignment:
Q  126 gtggtggtggtgccttttccttgtcaccagcggccgcctatatacgatctgggttgagtttccgtttcaaacaggcatcgctgcccgggttttgttgttc 225  Q
    ||||||||||||| |||||||||||||| ||||| |||| |||| | | ||||||| |||||| |||||||| ||| | ||||||||  |||||||  |     
T  13512973 gtggtggtggtgctttttccttgtcaccggcggctgcctttatatg-tttgggttgtgtttccatttcaaaccggcgttgctgcccgaattttgttaatg 13513071  T
Q  226 gttttcgtcttc 237  Q
    ||||||||||||    
T  13513072 gttttcgtcttc 13513083  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 16510967 - 16510831
Alignment:
Q  143 tccttgtcaccagcggccgcctatatacgatctgggttgagtttccgtttcaaacaggcatcgctgcccgggttttgttgttcgttttcgtcttcctc-- 240  Q
    |||||||||| |||| | |||| | || ||| ||||||| | ||| | ||||||| |||||||||||||| ||||||||||| | | |||||||||||      
T  16510967 tccttgtcacaagcgactgcctttttatgatatgggttgtggttctgcttcaaaccggcatcgctgcccgtgttttgttgttggatgtcgtcttcctcta 16510868  T
Q  241 gagtcatgtttgtgtggccgtttgtttcttggtgagg 277  Q
    || | |||||||||| |  | ||||||||||||||||    
T  16510867 gatttatgtttgtgttgttgcttgtttcttggtgagg 16510831  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 277
Target Start/End: Original strand, 38305655 - 38305778
Alignment:
Q  156 cggccgcctatatacgatctgggttgagtttccgtttcaaacaggcatcgctgcccgggttttgttgttcgttttcgtcttcctc--gagtcatgtttgt 253  Q
    ||||||||| || | ||| ||||||| | ||||| ||||||| ||| | |||||| | ||||||||||| | |||||||||||||  || | ||||||||    
T  38305655 cggccgcctttaaatgatatgggttgtggttccgcttcaaaccggcgttgctgcctgtgttttgttgttggatttcgtcttcctctagattgatgtttgt 38305754  T
Q  254 gtggccgtttgtttcttggtgagg 277  Q
    || |  | ||||||||||||||||    
T  38305755 gttgttgcttgtttcttggtgagg 38305778  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 3420401 - 3420368
Alignment:
Q  126 gtggtggtggtgccttttccttgtcaccagcggc 159  Q
    |||||||||||||||||||||||||||| |||||    
T  3420401 gtggtggtggtgccttttccttgtcaccggcggc 3420368  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 38484990 - 38485054
Alignment:
Q  176 gggttgagtttccgtttcaaacaggcatcgctgcccgggttttgttgttcgttttcgtcttcctc 240  Q
    |||||| ||||||| ||||||| ||| |||||||||  ||||||||||  | |||||||||||||    
T  38484990 gggttgtgtttccgcttcaaaccggcgtcgctgcccatgttttgttgtcaggtttcgtcttcctc 38485054  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 47326549 - 47326413
Alignment:
Q  143 tccttgtcaccagcggccgcctatatacgatctgggttgagtttccgtttcaaacaggcatcgctgcccgggttttgttgttcgttttcgtcttcctcga 242  Q
    ||||||||||| |||||||||| | || ||| | ||||| |||| |  ||||||  ||  |||||||||| ||||||||||| | |||| |||||||| |    
T  47326549 tccttgtcaccggcggccgcctttctatgatttcggttgtgttttcacttcaaatcggtgtcgctgcccgtgttttgttgttggatttcctcttcctcta 47326450  T
Q  243 g-tc-atgtttgtgtggccgtttgtttcttggtgagg 277  Q
    | || || ||||||| || | ||||||||||||||||    
T  47326449 gatcaatatttgtgttgctgcttgtttcttggtgagg 47326413  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 1653570 - 1653498
Alignment:
Q  168 tacgatctgggttgagtttccgtttcaaacaggcatcgctgcccgggttttgttgttcgttttcgtcttcctc 240  Q
    ||||||||||||||  ||| || ||||||| ||| ||| |||||| ||||||||||| | |||||||||||||    
T  1653570 tacgatctgggttgtcttttcgcttcaaaccggcgtcgatgcccgtgttttgttgttggatttcgtcttcctc 1653498  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 19175885 - 19175966
Alignment:
Q  143 tccttgtcaccagcggccgcctatatacgatctgggttgagtttccgtttcaaacaggcatcgctgcccgggttttgttgtt 224  Q
    ||||||||||  ||||| |||| | || ||| ||||||| | ||||  ||||||| |||||||||||||| |||||||||||    
T  19175885 tccttgtcacaggcggctgcctttttatgatatgggttgtggttcctcttcaaaccggcatcgctgcccgtgttttgttgtt 19175966  T

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