View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_76 (Length: 353)
Name: NF9795A_low_76
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_76 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 21794024 - 21794203
Alignment:
| Q |
7 |
atggacatcaccgaattttgagctattgttctctttatttaacaaactttcaccttgagttcattaagagacaagtgaatgaggttaa-cacaaatcaac |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
21794024 |
atggacatcaccgaattttgagctattgttctctttatttaacaaactttcatgttgagttcattaagagacaagtcaataaggttaaccacaaatcagt |
21794123 |
T |
|
| Q |
106 |
ataggcagccacatccttacttagcttctatatctttgatgatgtaccgacgtgtataaatgatttaattgctaatgaaa |
185 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21794124 |
ataggcagacaaatccttacctagcttctatatcttggatgatgtaccgacgtgtataaataatttaattgctaatgaaa |
21794203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 21794206 - 21794309
Alignment:
| Q |
233 |
tgataatgtcatagtga---ccaatttaattgatataactcggtctatatctaaacacttcacgaaaatcaacacaatgcactatccaaagaattcacct |
329 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21794206 |
tgataatgtcatggtgatcaccaatttaattgatataactcggtctatatctaaacacttcacgaaaatcaacacaatgcactatccaaagaattcacct |
21794305 |
T |
|
| Q |
330 |
tgat |
333 |
Q |
| |
|
|||| |
|
|
| T |
21794306 |
tgat |
21794309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 186
Target Start/End: Complemental strand, 9834630 - 9834473
Alignment:
| Q |
30 |
tattgttctctttatttaacaaactttcaccttgagttcattaagagacaagtgaatgaggttaac-acaaatcaacataggcagccacatccttactta |
128 |
Q |
| |
|
||||||||||||||||||||||||| || ||| ||| | || ||||||| ||| |||||| | || ||| |||| | ||| |||| || ||||||| |
|
|
| T |
9834630 |
tattgttctctttatttaacaaactctcgtgttgggtttactagaagacaagcgaacgaggttgtccacgaattaacaaatgcatccacgtctttactta |
9834531 |
T |
|
| Q |
129 |
gcttctatatctttgatgatgtaccgacgtgtataaatgatttaattgctaatgaaat |
186 |
Q |
| |
|
||| | ||| ||||||||| ||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
9834530 |
gctcccgtatttttgatgatttaccgacatgtataaataatttgattgctaatgaaat |
9834473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University