View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_78 (Length: 351)
Name: NF9795A_low_78
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_78 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 25802411 - 25802078
Alignment:
| Q |
18 |
cctgtgaaggtaaagtttcatttccccatcgttaagaaccatcggcagcttcgcgcaacatgggtggaggtcgaacccacaggatttgcagtggtaaaca |
117 |
Q |
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| T |
25802411 |
cctgtgaaggtaaagtttcatttccccatcgttaagaaccatcggcagcttcgcgcaacatgggtggaggtcgaacccacaggatttgcagtggtaaaca |
25802312 |
T |
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| Q |
118 |
aacccgttcacgtccttttcgcatgcgttgcaataacgcggcgtgtttcctggtggaatttgcatgaactgaaaggtgcattttgtgtaaaatggatgga |
217 |
Q |
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| T |
25802311 |
aacccgttcacgtccttttcgcatgcgttgcaataacgcagcgtgtttcctggtggaatttgcatgaactgaaaggtgcattttgtgtaaaatggatgga |
25802212 |
T |
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| Q |
218 |
agagtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgca |
317 |
Q |
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| T |
25802211 |
agagtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgca |
25802112 |
T |
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| Q |
318 |
tttgaatggaaattcgttgtgctcgaatcttagt |
351 |
Q |
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| T |
25802111 |
tttgaatggaaattcgttgtgctcgaatcttagt |
25802078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 67 - 351
Target Start/End: Complemental strand, 25816430 - 25816171
Alignment:
| Q |
67 |
ttcgcgcaacatgggtggaggtcgaacccacaggatttgcagtggtaaacaaacccgttcacgtccttttcgcatgcgttgcaataacgcggcgtgtttc |
166 |
Q |
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| T |
25816430 |
ttcgcgcaacatgggtggaggtcaaatccacatgatttgcagtggtatacaaacccgttcacgtc---------------gcagtaacgcggcgtgtttc |
25816346 |
T |
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| Q |
167 |
ctggtggaatttgcatgaactgaaaggtgcattttgtgtaaaatggatggaagagtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgtagtcgca |
266 |
Q |
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| T |
25816345 |
ctggtgggtttgg----------aaggtgcattttgtgtagaacgcatggaagagtgtggtagaaggtattgtgcagtgtgtgtgaaggtcattgtcaca |
25816256 |
T |
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| Q |
267 |
gatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatcttagt |
351 |
Q |
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| T |
25816255 |
aatgctgcatttgtaacgtgaacctatgcctacttcgttgcaaccgtcgcatttgaatggaaattcgttgtgttcgaatcttagt |
25816171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 112120 - 112453
Alignment:
| Q |
18 |
cctgtgaaggtaaagtttcatttccccatcgttaagaaccatcggcagcttcgcgcaacatgggtggaggtcgaacccacaggatttgcagtggtaaaca |
117 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
112120 |
cctgtaaaggtaaagtttcatttccccgtcgttaagaaccatcggcagctttgcgcaacacgggtggaggtcgaacccacaggatttgcagtggtaaaca |
112219 |
T |
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| Q |
118 |
aacccgttcacgtccttttcgcatgcgttgcaataacgcggcgtgtttcctggtggaatttgcatgaactgaaaggtgcattttgtgtaaaatggatgga |
217 |
Q |
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| T |
112220 |
aacccgttcacatccttttcgcatgcgttgcagtaatgcggcgtgtttcctggtgggatttgcatgaattggaaggtgcattttgtgtaaaatggatcga |
112319 |
T |
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| Q |
218 |
agagtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgca |
317 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||| ||||| |
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| T |
112320 |
agagtgtggtggaaggtattgcgcagtgtgtatgaaggtcgtagtcgcagatgctgcatttttaacgtgaatcgatgcctatttctttgcagccatcgca |
112419 |
T |
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| Q |
318 |
tttgaatggaaattcgttgtgctcgaatcttagt |
351 |
Q |
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| T |
112420 |
tttgaatggaaattcgttgtgctcgaatcttagt |
112453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 12530663 - 12530582
Alignment:
| Q |
248 |
tgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaaa |
329 |
Q |
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| T |
12530663 |
tgtgaagatcatagtcacaaatgttgcagctgtaacgcgaacctatgccaatttctttgcagccatcacatttgaatggaaa |
12530582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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