View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_8 (Length: 469)
Name: NF9795A_low_8
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 21 - 458
Target Start/End: Complemental strand, 26169597 - 26169160
Alignment:
| Q |
21 |
aacggagagagtatataacttttgagatacaaagaacattggattcatatgagtggccaagttaaatggcttatgaacctagctagcaagctctaagcat |
120 |
Q |
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| T |
26169597 |
aacggagagagtatataacttttgagatacaaagaacattgaattcatatgagtggccaagttaaatggcttataaacctagctagcaagctctaagcat |
26169498 |
T |
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| Q |
121 |
tcatataaacattgctgcattataatatgatgannnnnnnnatatggcagaacaatcaaactatatttgggaccattctagttgttgctataggcactaa |
220 |
Q |
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| T |
26169497 |
tcatataaacattgttgcattataatatgatgattttttttatatggcagaacaatcaaactatatttgggaccattctagttgttgctataggcactaa |
26169398 |
T |
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| Q |
221 |
caaataatgttaaaaatcataaaacttttgtaagttgtgtcaaagatgcaatggacaatccataataataattatcttagcttatattcatcaagataga |
320 |
Q |
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| T |
26169397 |
caaataatgttaaaaatcataaaacttttgtaagttgtgacaaagattcaatggacaatccataataataattatcttagcttatattcatcaagataga |
26169298 |
T |
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| Q |
321 |
ttagatcacgacaataattttgtttcttgaatgttcacattcccttccattaaaatttgagtgcatttaattgaattcatcccatataataaattcaaag |
420 |
Q |
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| T |
26169297 |
ttagatcacgacaataattttgtttcttgaatgttcacattcccttccattaaaatttgagtgcatttaattggattcatcccatataataaattcaaag |
26169198 |
T |
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| Q |
421 |
gatagaaactacgtagagtaacatgtacttacagtata |
458 |
Q |
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| T |
26169197 |
gatagaaactacatagagtaacatgcacttagagtata |
26169160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 305
Target Start/End: Complemental strand, 26181312 - 26181196
Alignment:
| Q |
187 |
ttgggaccattctagttgttgctataggcactaacaaataatgttaaaaatcataaaacttttgtaagttg-tgtcaaagatgcaatggacaatccataa |
285 |
Q |
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| T |
26181312 |
ttgggaccattctagttgttgccataagcactaacaaataacgataaaattaattaaaccttcgtaagttgttgacaaagattcaaagtacaatc---ga |
26181216 |
T |
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| Q |
286 |
taataattatcttagcttat |
305 |
Q |
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| T |
26181215 |
tgataattatcttagcttat |
26181196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 374
Target Start/End: Complemental strand, 26181182 - 26181135
Alignment:
| Q |
327 |
cacgacaataattttgtttcttgaatgttcacattcccttccattaaa |
374 |
Q |
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| T |
26181182 |
cacgacactaattttgtttcttgaatgttcccattccttttcattaaa |
26181135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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