View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_81 (Length: 350)
Name: NF9795A_low_81
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_81 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 15 - 348
Target Start/End: Original strand, 10078531 - 10078864
Alignment:
| Q |
15 |
tggacatcataatcaggcgcaacagtctgaagaacaattacagcagcaacagcagcatatggtggcccccaactcaaatggtgatcaaaactctgtgcaa |
114 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10078531 |
tggacatcataatcaggcgcaacagtctgaagatcaattacagcagcaacaacagcatatggtggcccccaactcaaatggtgatcaaaactctgtgcaa |
10078630 |
T |
|
| Q |
115 |
gctgctgctatgcaagtcccttctaacaatggtgtggtaagtgtaaataacaatgtcaattcagcatctgcatcgaccaccacaagcaccattgttggac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10078631 |
gctgctgctatgcaagtcccttctaacaatggtgtggtaagtgtaaataacaatgtcaattcagcatctgcatcgaccaccacaagcaccattgttggac |
10078730 |
T |
|
| Q |
215 |
ttctccaccagaactctatgaacgctagacagcaaaattcaatgaacaatgcaagcagtccatatggaggtagttcagctcatattccatccccaggttc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10078731 |
ttctccaccagaactctatgaacgctagacagcaaaattcaatgaacaatgcaagcagtccatatggaggtagttcagctcatattccatccccaggttc |
10078830 |
T |
|
| Q |
315 |
atgcagtacagtgccacaggcacaaccaaactcg |
348 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
10078831 |
atgcagtacagtgccacaggcacaaccaaactcg |
10078864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 85 - 347
Target Start/End: Complemental strand, 40776318 - 40776059
Alignment:
| Q |
85 |
aactcaaatggtgatcaaaactctgtgcaagctgctgctatgcaagtcccttctaacaatggtgtggtaagtgtaaataacaatgtcaattcagcatctg |
184 |
Q |
| |
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||||||||||| ||||||||| | |||||||||||| | |||||| | |||| | ||||||| |||| |||||||||| |||||| || || || | |
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| T |
40776318 |
aactcaaatggcgatcaaaacccagtgcaagctgcttccatgcaaattgcttccagcaatggtatggttagtgtaaatagttctgtcaactcggcgtccg |
40776219 |
T |
|
| Q |
185 |
catcgaccaccacaagcaccattgttggacttctccaccagaactctatgaacgctagacagcaaaattcaatgaacaatgcaagcagtccatatggagg |
284 |
Q |
| |
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|||| || ||||||||||| |||||||||||||||||||| |||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40776218 |
catcaacaaccacaagcactattgttggacttctccaccaaaactctgtgaattctagaca---aaattcaatgaacaatgcaagcagtccatatggagg |
40776122 |
T |
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| Q |
285 |
tagttcagctcatattccatccccaggttcatgcagtacagtgccacaggcacaaccaaactc |
347 |
Q |
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|| ||| | ||| ||||||||||| ||||| | |||||| ||||||||||| || |||||||| |
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| T |
40776121 |
taattctgttcagattccatcccctggttcctccagtactgtgccacaggcccagccaaactc |
40776059 |
T |
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