View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795A_low_96 (Length: 334)

Name: NF9795A_low_96
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795A_low_96
NF9795A_low_96
[»] chr4 (2 HSPs)
chr4 (149-334)||(11315298-11315483)
chr4 (21-187)||(11320860-11321034)
[»] chr6 (1 HSPs)
chr6 (25-107)||(23906778-23906860)
[»] chr3 (2 HSPs)
chr3 (25-139)||(9719973-9720087)
chr3 (31-108)||(2794229-2794306)
[»] chr7 (2 HSPs)
chr7 (32-107)||(3696692-3696767)
chr7 (68-135)||(3704199-3704266)
[»] chr5 (1 HSPs)
chr5 (32-107)||(1063533-1063608)
[»] chr1 (2 HSPs)
chr1 (42-139)||(43741715-43741812)
chr1 (72-104)||(19449550-19449582)
[»] chr8 (2 HSPs)
chr8 (68-108)||(15579426-15579466)
chr8 (72-104)||(17768464-17768496)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 149 - 334
Target Start/End: Complemental strand, 11315483 - 11315298
Alignment:
Q  149 taaaatttatttcaataatacttatggtacgctacctattttctcatatgttagtataaacatttcaataatttataatctaccccatattgatttatca 248  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11315483 taaaatttatttcaataatacttatggtacgctgcctattttctcatatgttagtataaacatttcaataatttataatctaccccatattgatttatca 11315384  T
Q  249 aatacatattatgaatgcatcatctgttgccgctagtctatccacaaccacaataatcatagcagagttaattatcaatcttttga 334  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11315383 aatacatattatgaatacatcatctgttgccagtagtctatccacaaccacaataatcatagcagagttaattctcaatcttttga 11315298  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 11321034 - 11320860
Alignment:
Q  21 atcacctttggattcttcaaaatcaattgaatagaatacttttattgtggttgcgattttaggttttacaatcttgctatcctcttttaatctcaaacaa 120  Q
    |||||||||||||||||||||||||||||| || ||| |||||||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  11321034 atcacctttggattcttcaaaatcaattgagtaaaatccttttattttggttgtgattttaggttttgcaatcttactatcctcttttaatctcaaacaa 11320935  T
Q  121 aatttcaattttgacaacc--------gttaaacattaaaatttatttcaataatacttatggtacgctacctat 187  Q
     ||||| ||||||||||||        || ||||||||||||||||||||||||| ||||||||||||| |||||    
T  11320934 catttcgattttgacaaccttggttaggtcaaacattaaaatttatttcaataatgcttatggtacgctgcctat 11320860  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 23906860 - 23906778
Alignment:
Q  25 cctttggattcttcaaaatcaattgaatagaatacttttattgtggttgcgattttaggttttacaatcttgctatcctcttt 107  Q
    |||||||||||| ||| ||||||||| |||||| |||  ||| |||||||| ||||||||||| ||||||||||| |||||||    
T  23906860 cctttggattctacaatatcaattgagtagaatccttcaattttggttgcggttttaggttttgcaatcttgctaacctcttt 23906778  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 9720087 - 9719973
Alignment:
Q  25 cctttggattcttcaaaatcaattgaatagaatacttttattgtggttgcgattttaggttttacaatcttgctatcctcttttaatctcaaacaaaatt 124  Q
    ||||| |||||| |||||||||| ||||||||| |||  ||| |||||||||||||| ||||||| || | |||||||| ||| ||||| || ||||||     
T  9720087 cctttcgattctacaaaatcaatagaatagaatccttcgattttggttgcgattttatgttttacgatttcgctatcctgtttcaatctgaagcaaaatc 9719988  T
Q  125 tcaattttgacaacc 139  Q
    || ||||| ||||||    
T  9719987 tcgatttttacaacc 9719973  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 2794229 - 2794306
Alignment:
Q  31 gattcttcaaaatcaattgaatagaatacttttattgtggttgcgattttaggttttacaatcttgctatcctctttt 108  Q
    |||||| ||||||||||  | |||||| |||| ||| ||||||| |||||||||||| | ||||||||||| ||||||    
T  2794229 gattctacaaaatcaatgcagtagaatcctttgattttggttgcaattttaggttttgcgatcttgctatcatctttt 2794306  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 3696767 - 3696692
Alignment:
Q  32 attcttcaaaatcaattgaatagaatacttttattgtggttgcgattttaggttttacaatcttgctatcctcttt 107  Q
    ||||| |||||| |||||| |||||| || | ||| |||||| ||| ||| ||||||| |||||||||||||||||    
T  3696767 attctacaaaattaattgagtagaatcctataattttggttgtgatcttatgttttacgatcttgctatcctcttt 3696692  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 3704266 - 3704199
Alignment:
Q  68 tggttgcgattttaggttttacaatcttgctatcctcttttaatctcaaacaaaatttcaattttgac 135  Q
    |||||| ||| ||| ||||||||||||||||||||||||| ||||| |  ||| ||||| ||||||||    
T  3704266 tggttgtgatcttatgttttacaatcttgctatcctctttcaatctgatgcaatatttcgattttgac 3704199  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 1063533 - 1063608
Alignment:
Q  32 attcttcaaaatcaattgaatagaatacttttattgtggttgcgattttaggttttacaatcttgctatcctcttt 107  Q
    ||||| ||||||||||||| |||||| | || ||| |||||||||||||||||||| | || |  |||||||||||    
T  1063533 attctacaaaatcaattgagtagaatccattaattttggttgcgattttaggttttgcgatttaactatcctcttt 1063608  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 43741812 - 43741715
Alignment:
Q  42 atcaattgaatagaatacttttattgtggttgcgattttaggttttacaatcttgctatcctcttttaatctcaaacaaaatttcaattttgacaacc 139  Q
    ||||||| | |||||| |||| ||| ||||||||||||||| ||||   |  ||||||| |||||| |||||||| |||||| || |||||| |||||    
T  43741812 atcaatttagtagaatcctttaattttggttgcgattttagattttgtgagtttgctattctctttcaatctcaagcaaaatctcgattttggcaacc 43741715  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 19449582 - 19449550
Alignment:
Q  72 tgcgattttaggttttacaatcttgctatcctc 104  Q
    |||||||||||||||||| ||||||||||||||    
T  19449582 tgcgattttaggttttacgatcttgctatcctc 19449550  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 15579466 - 15579426
Alignment:
Q  68 tggttgcgattttaggttttacaatcttgctatcctctttt 108  Q
    |||||||||||||| ||||||| |||||||||||| |||||    
T  15579466 tggttgcgattttatgttttacgatcttgctatcccctttt 15579426  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 17768464 - 17768496
Alignment:
Q  72 tgcgattttaggttttacaatcttgctatcctc 104  Q
    |||||||||||||||||| ||||||||||||||    
T  17768464 tgcgattttaggttttacgatcttgctatcctc 17768496  T

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