View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_99 (Length: 330)
Name: NF9795A_low_99
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_99 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 44660523 - 44660829
Alignment:
| Q |
12 |
catcaaaaaatttatgaaagtttgtgtctttatgctaaaatggtggttggaaagcgatttagtgtatagtttgcttcatgagttttgcatttgatttaac |
111 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
44660523 |
catcaaaagatttatgaaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagtgtatagtttgtttcatgagttttgcatttgatttaac |
44660622 |
T |
|
| Q |
112 |
tatgttatgtttttgttttagtactatgctgtgtttttcaatgttcttggtttaggaacaataacaaatgttgtttatccgaagcagtttgatgaaaagt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
44660623 |
tatgttatgtttttgttttagtactatgctgtgtttttcaatgttcttggtttaggaacaataacaaatgttgtttattcgaagcagtttgatgaaaagt |
44660722 |
T |
|
| Q |
212 |
ctctttttcctttgcattgaatcaaagcctgctgtttatcaaatgttgttgatgcagcatgaatcgcagttacttacaaacgcggcgatatcaaaagcca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44660723 |
ctctttttcctttgcattgaatcaaagcctgctgtttatcaaatgttgttgatgcagcatgaatcgcagttacttacaaacgcggcgatatcaaaagcca |
44660822 |
T |
|
| Q |
312 |
tgatgtc |
318 |
Q |
| |
|
||||||| |
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|
| T |
44660823 |
tgatgtc |
44660829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 43300388 - 43300694
Alignment:
| Q |
12 |
catcaaaaaatttatgaaagtttgtgtctttatgctaaaatggtggttggaaagcgatttagtgtatagtttgcttcatgagttttgcatttgatttaac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
43300388 |
catcaaaaaatttatgaaagtttgtgtctttacgctaaaatggtggttggaaagtgatttagtgtatagtttgtttcatgagttttgcttttgatttaac |
43300487 |
T |
|
| Q |
112 |
tatgttatgtttttgttttagtactatgctgtgtttttcaatgttcttggtttaggaacaataacaaatgttgtttatccgaagcagtttgatgaaaagt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| |
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|
| T |
43300488 |
tatgttatgtttttgttttagtactatgctgtgtttttcaatgttcttggtttaggaacaataacaaatgttgtttattcaaagcagtgtgatgaaaagc |
43300587 |
T |
|
| Q |
212 |
ctctttttcctttgcattgaatcaaagcctgctgtttatcaaatgttgttgatgcagcatgaatcgcagttacttacaaacgcggcgatatcaaaagcca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43300588 |
ctctttttcctttgcattgaatcaaagcctgctgtttatcaaatgttgttgatgcagcatgaatcgcagttacttacaaacgcggcgatatcaaaagcca |
43300687 |
T |
|
| Q |
312 |
tgatgtc |
318 |
Q |
| |
|
||||||| |
|
|
| T |
43300688 |
tgatgtc |
43300694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 318
Target Start/End: Complemental strand, 41958504 - 41958191
Alignment:
| Q |
12 |
catcaaaaaatttatgaaagtttgtgtctttatgctaaaatggtggttggaaagcgatttagtgtatagtttgcttcatgagttttgcatttgatttaac |
111 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
41958504 |
catcaaaaaatttatgtaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagtgtatagtttgtttcatgagttttgcatttgatttaac |
41958405 |
T |
|
| Q |
112 |
tatgttatgtttttgttttagtactatgctgtgtttttcaatgttcttggtttagga------acaataacaaatgttgtttatccgaagcagtttgatg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| | ||||||||||||| |
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|
| T |
41958404 |
tatgttatgtttttgttttagtactatgctgtgtttttcgatgtttttggtttaggaacaaatacaataacaaatgttgtttattcaaagcagtttgatg |
41958305 |
T |
|
| Q |
206 |
aaaagtctctttttcctttgcattgaatcaaagcctgctgtttatcaaatgttgttgatgcagcatgaatcgcagttacttac-aaacgcggcgatatca |
304 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
41958304 |
aaaagcctctttttcctttgcattgaatcaaagcctgctgtttatcaaatgttgttgatgcagcatgaatcgcagttacttacaaaacacggcgatatca |
41958205 |
T |
|
| Q |
305 |
aaagccatgatgtc |
318 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
41958204 |
aaagccatgatgtc |
41958191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 19209014 - 19208779
Alignment:
| Q |
13 |
atcaaaaaatttatgaaagtttgtgtctttatgctaaaatggtggttggaaagcgatttagtgtatagtttgcttcatgagttttgcatttgatttaact |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| |||||||||||||||||||||| |
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|
| T |
19209014 |
atcaaaaaatttatgaaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagtgtgtagtttatttcgtgagttttgcatttgatttaaca |
19208915 |
T |
|
| Q |
113 |
atgttatgtttttgttttagtactatgctgtgtttttcaatgttcttggtttaggaacaataacaaatgttgtttatccgaagcagtttgatgaaaagtc |
212 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||| | |
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|
| T |
19208914 |
atgttatgtttttgttttagtaccatgttgtgtttttcaatgttcttggtttaggaacaataacaagtgttgtttattcaaagcagtttgatgaaaagcc |
19208815 |
T |
|
| Q |
213 |
tctttttcctttgcattgaatcaaagcctgctgttt |
248 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||||| |
|
|
| T |
19208814 |
tctttttcctttgcagtgaatcaaagactgttgttt |
19208779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 23738099 - 23738334
Alignment:
| Q |
13 |
atcaaaaaatttatgaaagtttgtgtctttatgctaaaatggtggttggaaagcgatttagtgtatagtttgcttcatgagttttgcatttgatttaact |
112 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||| ||| |||||||||||||||||||||| |
|
|
| T |
23738099 |
atcaaaaagtttatgaaagtctgtgtctttatgctaaaatggtggttggaaagtgatttagtgtgtagtttatttcgtgagttttgcatttgatttaaca |
23738198 |
T |
|
| Q |
113 |
atgttatgtttttgttttagtactatgctgtgtttttcaatgttcttggtttaggaacaataacaaatgttgtttatccgaagcagtttgatgaaaagtc |
212 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| | |
|
|
| T |
23738199 |
atgttatgtttttgttttagtaccatgttgtgtttttcaatgttcttggtttaggaacaataacaaatgttgtttattcaaagcagtttgatgaaaagcc |
23738298 |
T |
|
| Q |
213 |
tctttttcctttgcattgaatcaaagcctgctgttt |
248 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
23738299 |
tctttttcctttgcagtgaatcaaagactgctgttt |
23738334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 28450500 - 28450677
Alignment:
| Q |
12 |
catcaaaaaatttatgaaagtttgtgtctttatgctaaaatggtggttggaaagcgatttagtgtatagtttgcttcatgagttttgcatttgatttaac |
111 |
Q |
| |
|
||||||| ||||||||||||||| | |||||| ||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||| ||||||| |
|
|
| T |
28450500 |
catcaaagaatttatgaaagtttatatctttaggctaaaatggtggttggaaagtgatttagttaatagtttgtttcatgagttttgcatttaatttaac |
28450599 |
T |
|
| Q |
112 |
tatgttatgtttttgttttagtactatgctgtgtttttcaatgttcttggtttaggaacaataacaaatgttgtttat |
189 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28450600 |
tatgttatgtttttgttttagtactatgttgtgtttttcaatgttcttggtttaggaacaataacaaatgttgtttat |
28450677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 28450712 - 28450786
Alignment:
| Q |
112 |
tatgttatgtttttgttttagtactatgctgtgtttttcaatgttcttggtttaggaacaataacaaatgttgtt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |||||||||||| |
|
|
| T |
28450712 |
tatgttatgtttttgttttagtactatgttgtgtttttcaatgtttttggttaaggaacaatgacaaatgttgtt |
28450786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 250 - 317
Target Start/End: Complemental strand, 19208261 - 19208193
Alignment:
| Q |
250 |
tcaaatgttgttgatgcagcatgaa-tcgcagttacttacaaacgcggcgatatcaaaagccatgatgt |
317 |
Q |
| |
|
||||||| |||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19208261 |
tcaaatgatgttgatgcagcctgaaatcgctgttacttacaaacgcggcgatatcaaaagccatgatgt |
19208193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 317
Target Start/End: Original strand, 23738854 - 23738922
Alignment:
| Q |
250 |
tcaaatgttgttgatgcagcatgaa-tcgcagttacttacaaacgcggcgatatcaaaagccatgatgt |
317 |
Q |
| |
|
||||||| |||||||||||| |||| |||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23738854 |
tcaaatgatgttgatgcagcctgaaatcgctgtaacttacaaacgcggcgatatcaaaagccatgatgt |
23738922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 28451759 - 28451811
Alignment:
| Q |
266 |
cagcatgaatcgcagttacttacaaacgcggcgatatcaaaagccatgatgtc |
318 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28451759 |
cagcctgaatcgcagttacttacaaacgcggcgacatcaaaagccatgatgtc |
28451811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 28451135 - 28451169
Alignment:
| Q |
193 |
aagcagtttgatgaaaagtctctttttcctttgca |
227 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
28451135 |
aagcagtttgatgaaaagcctctttttcctttgca |
28451169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 22 - 248
Target Start/End: Original strand, 43916325 - 43916552
Alignment:
| Q |
22 |
tttatgaaagtttgtgtctttatgctaaaatggtggttggaaagcgatttagtgtatagtttgcttcatgagttttgcatttgatttaactatgttatgt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43916325 |
tttatgaaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagtgtacaatttgtttcatgagttttgcatttgatttaactatgttatgt |
43916424 |
T |
|
| Q |
122 |
ttttgttttagtactatgctgtgtttttcaatgttcttggtttaggaacaataacaaatgttgtttatccgaagcagtttgatgaaaagtctc-tttttc |
220 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| ||| |||||| |
|
|
| T |
43916425 |
ttttgttttagtactatgttgtgtttttcaatgttcttggtttaggaacaataacaaatgctgtttattcaaagcagtttgatgaaaaacctcttttttc |
43916524 |
T |
|
| Q |
221 |
ctttgcattgaatcaaagcctgctgttt |
248 |
Q |
| |
|
||||||||||||||||||| || ||||| |
|
|
| T |
43916525 |
ctttgcattgaatcaaagcatgttgttt |
43916552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 251 - 318
Target Start/End: Original strand, 43916758 - 43916825
Alignment:
| Q |
251 |
caaatgttgttgatgcagcatgaatcgcagttacttacaaacgcggcgatatcaaaagccatgatgtc |
318 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43916758 |
caaatgttgttgatgtagcctgaatcgtagttacttacaaatgcggcgatatcaaaagccatgatgtc |
43916825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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