View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9795_high_1 (Length: 386)

Name: NF9795_high_1
Description: NF9795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9795_high_1
NF9795_high_1
[»] chr1 (6 HSPs)
chr1 (54-238)||(20432692-20432876)
chr1 (234-376)||(20432901-20433046)
chr1 (25-153)||(9998426-9998554)
chr1 (15-105)||(9993260-9993350)
chr1 (15-105)||(9988405-9988494)
chr1 (240-360)||(20433559-20433676)
[»] chr4 (1 HSPs)
chr4 (15-129)||(51988768-51988879)
[»] chr8 (3 HSPs)
chr8 (86-129)||(13145767-13145810)
chr8 (66-129)||(26379070-26379133)
chr8 (86-122)||(13146650-13146686)
[»] chr3 (1 HSPs)
chr3 (331-374)||(17344422-17344465)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 5e-81; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 54 - 238
Target Start/End: Original strand, 20432692 - 20432876
Alignment:
Q  54 tttcaattattcatttgttagttgtgtgtatcatttttattccttttaatctttattaaatctagatctgcaatcttttctcatgtagagaatactttga 153  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  20432692 tttcaattattcatttgttagttgtgtgtatcatttttattcattttaatctttattaaatccagatctgcaatcttttctcatgcagagaatactttga 20432791  T
Q  154 cactaaacgtgttgaagatggtttcatttcatcatcactttcatcttccatgtgttttatatggtcgaccacaacttctatcttt 238  Q
    | ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  20432792 cgctaaacgtgttaaagatggtttcatttcatcatcactttcgtcttccatgtgttttatgtggtcgatcacaacttctatcttt 20432876  T

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Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 234 - 376
Target Start/End: Original strand, 20432901 - 20433046
Alignment:
Q  234 tctttgtagagatagagaagcaaatgtatgccttgtatctaatttaatatttagtgatttatgtaacagaaacgt----gaccatggtataaagtgccac 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| || ||| ||||||||    |||||||||||||||||||||    
T  20432901 tctttgtagagatagagaagcaaatgtatgccttgtatctaatttaat-tttagttattcatataatagaaacgtacatgaccatggtataaagtgccac 20432999  T
Q  330 cgaggaaaaaacataccaacaattttggaactagatctttccctttg 376  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  20433000 cgaggagaaaacataccaacaattttggaactagatctttccctttg 20433046  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 9998426 - 9998554
Alignment:
Q  25 tatatatcttttcaattatgaatccacactttcaattattcatttgttagttgtgtgtatcatttttattccttttaatctttattaaatctagatctgc 124  Q
    ||||||||||||||||||| | |||||||||| | | ||||||||||| |||| || |||| ||||||||  ||||||||| ||||| |||| |||||||    
T  9998426 tatatatcttttcaattataattccacacttttattcattcatttgtttgttgcgtttatcttttttatttattttaatctctattacatcttgatctgc 9998525  T
Q  125 aatcttttctcatgtagagaatactttga 153  Q
    ||||| |||||||| |||||| |||||||    
T  9998526 aatctcttctcatgcagagaacactttga 9998554  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 9993260 - 9993350
Alignment:
Q  15 atgttgcaggtatatatcttttcaattatgaatccacactttcaattattcatttgttagttgtgtgtatcatttttattccttttaatct 105  Q
    ||||||||||||||||||||||||||||| | |||||| ||||| ||||||||||||| |||| || ||||| ||||||| ||||||||||    
T  9993260 atgttgcaggtatatatcttttcaattataattccacattttcatttattcatttgtttgttgcgtttatcaattttatttcttttaatct 9993350  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 9988405 - 9988494
Alignment:
Q  15 atgttgcaggtatatatcttttcaattatgaatccacactttcaattattcatttgttagttgtgtgtatcatttttattccttttaatct 105  Q
    ||||||||||||||||||||||||||||| | |||||| ||||| ||||||||||||| |||| || |||||  |||||| ||||||||||    
T  9988405 atgttgcaggtatatatcttttcaattataattccacattttcatttattcatttgtttgttgcgtttatca-atttatttcttttaatct 9988494  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 20433676 - 20433559
Alignment:
Q  240 tagagatagagaagcaaatgtatgccttgtatctaatttaatatttagtgatttatgtaacagaaacgtgaccatggtataaagtgccaccgaggaaaaa 339  Q
    |||||||||||||| |||  |||||||| ||||||||||||||||| || ||| || ||| | |||| |||   |||||||||||||||| ||||| |||    
T  20433676 tagagatagagaagaaaacatatgccttatatctaatttaatattttgttattcatataataaaaacatga---tggtataaagtgccactgaggagaaa 20433580  T
Q  340 acataccaacaattttggaac 360  Q
    |||||  ||||||||||||||    
T  20433579 acatagtaacaattttggaac 20433559  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 51988768 - 51988879
Alignment:
Q  15 atgttgcaggtatatatcttttcaattatgaatccacactttcaattattcatttgttagttgtgtgtatcatttttattccttttaatctttattaaat 114  Q
    |||| |||||||||||  |||||| |||||| |||| |||||   | ||| ||||||| |||| || ||| ||||||||| |||||||||| ||||||||    
T  51988768 atgtcgcaggtatatacattttcacttatgattccatacttt---tcatttatttgtttgttgagtttattatttttatttcttttaatctctattaaat 51988864  T
Q  115 ctagatctgcaatct 129  Q
     ||||||||||||||    
T  51988865 atagatctgcaatct 51988879  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 13145810 - 13145767
Alignment:
Q  86 atttttattccttttaatctttattaaatctagatctgcaatct 129  Q
    ||||||||| ||||||||||||||||||| |||| |||||||||    
T  13145810 atttttatttcttttaatctttattaaatatagacctgcaatct 13145767  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 26379133 - 26379070
Alignment:
Q  66 atttgttagttgtgtgtatcatttttattccttttaatctttattaaatctagatctgcaatct 129  Q
    ||||||| |||| || ||| |||||||||  |||||||||||||||||| |||||||| |||||    
T  26379133 atttgtttgttgagtttattatttttattttttttaatctttattaaatatagatctgtaatct 26379070  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 13146650 - 13146686
Alignment:
Q  86 atttttattccttttaatctttattaaatctagatct 122  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  13146650 atttttatttcttttaatctttattaaatatagatct 13146686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 374
Target Start/End: Original strand, 17344422 - 17344465
Alignment:
Q  331 gaggaaaaaacataccaacaattttggaactagatctttccctt 374  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||    
T  17344422 gaggagaaaacataccatcaattttagaactagatctttccctt 17344465  T

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