View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795_low_3 (Length: 394)
Name: NF9795_low_3
Description: NF9795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 7 - 382
Target Start/End: Original strand, 14579692 - 14580067
Alignment:
| Q |
7 |
aattgaaggttttcttctatagttttccaagaaatatgtggctacacaggaaggtaattccattgaagcactaaaaaccacagccaagtaaatgttgaat |
106 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14579692 |
aattgaaggttttcttctaaggttttccaagaaatatgttgctacacaggaaggtaattccattgaagcactaaaaaccacagccaagtaaatgttgaat |
14579791 |
T |
|
| Q |
107 |
cctaaatttccaacagctagtggcataccgaaataaaccattccaagtccaattccaagaatcataacagctatcattcttataacagcccatcttttat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14579792 |
cctaaatttccaacagctagtggcataccaaaataaaccattccaagtccaattccaagaatcataacagctatcattcttataacagcccatcttttat |
14579891 |
T |
|
| Q |
207 |
gaaataattctcctattgatgagtaaagttgaaaaaatgaaactttttctttttggggaagtattggtaaattcgaagctaagttaacgctatcatcatc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14579892 |
gaaataattctcctattgatgagtaaagttgaaaaaatgaaactttttcttttgggggaagttttggtaaattcgaagctaagttaacgctatcatcatc |
14579991 |
T |
|
| Q |
307 |
ggcactttcttcagaagaaacccttttgagcattttcaaaatttctttctctcgaccttgcataacaagccaccta |
382 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14579992 |
ggcactttcttcagaagaaacccttttgagcattttcaaaatttctttctctcgaccttgcataacaagccaccta |
14580067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 7 - 382
Target Start/End: Complemental strand, 14543895 - 14543520
Alignment:
| Q |
7 |
aattgaaggttttcttctatagttttccaagaaatatgtggctacacaggaaggtaattccattgaagcactaaaaaccacagccaagtaaatgttgaat |
106 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
14543895 |
aattgaaggttttcttctaaggttttccaagaaatatgttgctacacatgaaggtaattccattgaagcactaaaaaccactgccaattaaatgttgaat |
14543796 |
T |
|
| Q |
107 |
cctaaatttccaacagctagtggcataccgaaataaaccattccaagtccaattccaagaatcataacagctatcattcttataacagcccatcttttat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14543795 |
cctaaatttccaacagctagtggcatacctaaataaaccattccaagtccaattccaagaatcataacagctatcattcttataacagcccatcttttat |
14543696 |
T |
|
| Q |
207 |
gaaataattctcctattgatgagtaaagttgaaaaaatgaaactttttctttttggggaagtattggtaaattcgaagctaagttaacgctatcatcatc |
306 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
14543695 |
gaaataattctcctattgatgagtaaagttgaaaaaatgaaactttttcttttgggggaagttttggtaaattcgaagctaagttaacgctatcatcatc |
14543596 |
T |
|
| Q |
307 |
ggcactttcttcagaagaaacccttttgagcattttcaaaatttctttctctcgaccttgcataacaagccaccta |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14543595 |
ggcactttcttcagaagaaacccttttgagcattttcaaaatttctttctctcgaccttgcataacaagccaccta |
14543520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 381
Target Start/End: Original strand, 35621821 - 35622195
Alignment:
| Q |
7 |
aattgaaggttttcttctatagttttccaagaaatatgtggctacacaggaaggtaattccattgaagcactaaaaaccacagccaagtaaatgttgaat |
106 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||| | ||||| || ||||||| ||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
35621821 |
aattgaaagttttcttctatagttttccaagaagtatattgctacgcaagaaggtatttccattgaagcactaaaaactacagccaaataaatgttgaac |
35621920 |
T |
|
| Q |
107 |
cctaaatttccaacagctagtggcataccgaaataaaccattccaagtccaattccaagaatcataacagctatcattcttataacagcccatcttttat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
35621921 |
cctaaatttccaacagctagtggcataccataataaaccattccaattccaatactaagaatcataacagctatcattcttataagagcccattttttat |
35622020 |
T |
|
| Q |
207 |
gaaataattctcctattgatgagtaaagttgaaaaaatgaaactttttctttttggggaagtattggtaaattcgaagctaagttaacgctatcatcatc |
306 |
Q |
| |
|
|||| |||| ||||||||| |||||| ||| ||||| ||||| |||||||||| ||| || |||||||| | ||||||| ||||| | |||||||||| |
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|
| T |
35622021 |
gaaacaattttcctattgaagagtaatgtttaaaaattgaaattttttcttttgcgggcggttttggtaaacttgaagctaggttaatgttatcatcatc |
35622120 |
T |
|
| Q |
307 |
ggcactttcttcagaagaaacccttttgagcattttcaaaatttctttctctcgaccttgcataacaagccacct |
381 |
Q |
| |
|
|||||||||| || ||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
35622121 |
aacactttcttctgatgaaactttattgagcattttcagaatttctttctctcgaccttgcataacaagccacct |
35622195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 381
Target Start/End: Original strand, 34262900 - 34263277
Alignment:
| Q |
7 |
aattgaaggttttcttctatagttttccaagaaatatgtggctacacaggaaggtaattccattgaagcactaaaaaccacagccaagtaaatgttgaat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| || |||| |||||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
34262900 |
aattgaaggttttcttctatagttttccaagaaatatgttgctacacatgagggtatttccattgaagcactaaaaaccacagccaaataaatattgaat |
34262999 |
T |
|
| Q |
107 |
cctaaatttccaacagctagtggcataccgaaataaaccattccaagtccaattccaagaatcataacagctatcattcttataacagcccatcttttat |
206 |
Q |
| |
|
|| ||||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
34263000 |
cccaaatttccaactgctagtggcataccaagataaaccattccaattccaattccaagaatcataacagctattattcttataagagcccatcttttat |
34263099 |
T |
|
| Q |
207 |
gaaataattctcctattgatgagtaaagttgaaaaaatgaaactttttctttttggggaagtattggtaaattcgaagctaagttaacgct---atcatc |
303 |
Q |
| |
|
||| ||||| |||||||| |||||| ||||||||| || ||| ||||||||| ||| || |||||||| ||||| ||| ||| | | |||||| |
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|
| T |
34263100 |
gaatcaattcacctattgaagagtaatgttgaaaaattgtaaccttttcttttgtgggtggttttggtaaactcgaacctagattagtgttatcatcatc |
34263199 |
T |
|
| Q |
304 |
atcggcactttcttcagaagaaacccttttgagcattttcaaaatttctttctctcgaccttgcataacaagccacct |
381 |
Q |
| |
|
||| ||||||||| || |||| ||||||||| |||| | |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34263200 |
atcaacactttcttttgataaaactcttttgagcctttttataatttctttctctcgaccttgcataataagccacct |
34263277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 37577602 - 37577694
Alignment:
| Q |
7 |
aattgaaggttttcttctatagttttccaagaaatatgtggctacacaggaaggtaattccattgaagcactaaaaaccacagccaagtaaat |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| || |||||||||| |||||||||||||||| ||||| |
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|
| T |
37577602 |
aattgaaggttttcttctatagttttccaagaaatatgttactaaacataaaggtattttcattgaagcattaaaaaccacagccaaataaat |
37577694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 32 - 247
Target Start/End: Complemental strand, 10404865 - 10404650
Alignment:
| Q |
32 |
tccaagaaatatgtggctacacaggaaggtaattccattgaagcactaaaaaccacagccaagtaaatgttgaatcctaaatttccaacagctagtggca |
131 |
Q |
| |
|
||||||||||| || || ||||| || |||| |||||| | ||| |||| || || ||||||||||||| ||||||||| |||||||| || ||||||| |
|
|
| T |
10404865 |
tccaagaaataagtagcaacacaagacggtatttccatcaaggcattaaacacaacggccaagtaaatgtcgaatcctaagtttccaacggcgagtggca |
10404766 |
T |
|
| Q |
132 |
taccgaaataaaccattccaagtccaattccaagaatcataacagctatcattcttataacagcccatcttttatgaaataattctcctattgatgagta |
231 |
Q |
| |
|
|||| |||||||||||||||| ||| || ||||||| ||||| || | ||||||| | | |||||| ||| | | ||| || | | |||||||||||| |
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|
| T |
10404765 |
taccaaaataaaccattccaattcccataccaagaaccataattgcaaccattcttttcaaagcccagcttctttcaaacaactttgttattgatgagta |
10404666 |
T |
|
| Q |
232 |
aagttgaaaaaatgaa |
247 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
10404665 |
tagttgaaaaactgaa |
10404650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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