View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9796_high_3 (Length: 384)
Name: NF9796_high_3
Description: NF9796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9796_high_3 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
| [»] scaffold0289 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 15035211 - 15035570
Alignment:
| Q |
18 |
atgtatttgcaacatcacctcatgctgcaacaataatccaaggcagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccaaatcaagac |
117 |
Q |
| |
|
||||| |||| |||||||||||||||||||||| |||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| | || | | |
|
|
| T |
15035211 |
atgtaattgccacatcacctcatgctgcaacaaaaatcaaaggcagtgaggcagatgctctgttgaagtggaaagcaagccttgacaaccacaacagggc |
15035310 |
T |
|
| Q |
118 |
attgctttcttcatggattggtaataatccttgtagc---tgggaaggaattacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccgat |
214 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15035311 |
attgctctcttcatggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccaat |
15035410 |
T |
|
| Q |
215 |
attggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtaccag |
314 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| || ||| |
|
|
| T |
15035411 |
attggactaaaaggtacgcttcaaactctcaatttctcatcacttccgaaattgaaaagtttagttttaagcagcaactccttctacggtgtagttccac |
15035510 |
T |
|
| Q |
315 |
acaatattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctg |
374 |
Q |
| |
|
|| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15035511 |
accatattggtgtaatgtccaatctagaaactcttgatttgtcactaaatgaactctctg |
15035570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 14501889 - 14502244
Alignment:
| Q |
19 |
tgtatttgcaacatcacctcatgctgcaacaataatccaaggcagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccaaatcaagaca |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | | | || |
|
|
| T |
14501889 |
tgtaattgcaacatcacctcatgctgcaacaataatccaaggtagcgaggctgatgctctgttgaagtggaaagcaagccttgacaacaacagtagggca |
14501988 |
T |
|
| Q |
119 |
ttgctttcttcatggattggtaataatccttgtagctgggaaggaattacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattg |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14501989 |
ttgctttcttcatggaatggtaataatccttgtagttgggaaggaatcacatgtgataatgattcaaaatccatcaacaaggtaaatctcactgatattg |
14502088 |
T |
|
| Q |
219 |
gactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtaccagacaa |
318 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||| ||||| | | |||||||||| |||||| ||||| || | ||| ||| || | |
|
|
| T |
14502089 |
gactaaaaggtacgcttcaaagtctcaatttatcatcacttccaaaaatccgcaccttagttttaaaaaacaactcattctatggagctgttccacacca |
14502188 |
T |
|
| Q |
319 |
tattggggtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctg |
374 |
Q |
| |
|
|||||| |||||||| || ||||| ||||||||||||||||||||| | ||||||| |
|
|
| T |
14502189 |
tattggagtgatgtcaaacctagacactcttgatttgtcactaaataatctctctg |
14502244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 31 - 265
Target Start/End: Original strand, 15015751 - 15015988
Alignment:
| Q |
31 |
atcacctcatgctgcaacaataatccaaggcagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccaaatcaagacattgctttcttca |
130 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| | ||||| || |||||||||||||||||| |||| |||||||||||| ||| |||| || |||||| |
|
|
| T |
15015751 |
atcacctcatgctgcaacaaaaatcaaaggccgtgaggcagagtctctgttgaagtggaaagaaagctttgacaaccaaagcaaagcattactctcttca |
15015850 |
T |
|
| Q |
131 |
tggattggtaataatccttgtag---ctgggaaggaattacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaag |
227 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15015851 |
tggattggtaataatccttgtagtagctgggaaggaatcacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccaatattggactaaaag |
15015950 |
T |
|
| Q |
228 |
gtacgcttcaaagtcttaatttctcatcactttcaaaa |
265 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
15015951 |
gtacacttcaaagtctcaatttctcatcacttccaaaa |
15015988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 33 - 358
Target Start/End: Complemental strand, 14534867 - 14534539
Alignment:
| Q |
33 |
cacctcatgctgcaacaataatccaaggcagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccaaatcaagacattgctttcttcatg |
132 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||| |||||||| |
|
|
| T |
14534867 |
caccttatgctgcaacaaatgaccaaggcagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccatagcaatgctttgctctcttcatg |
14534768 |
T |
|
| Q |
133 |
gattggtaataatccttgtagc---tgggaaggaattacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggt |
229 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| || |||||| || | ||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14534767 |
gattggcaataatccttgtagtagttgggaaggaatcacgtgtgattataaatcaaagtccatcaacaaggtaaatctcactgatattggactaaaaggt |
14534668 |
T |
|
| Q |
230 |
acgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggggtga |
329 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||| | | | ||||||||||| ||||| ||| ||||| ||||| ||| || ||||||| | || |
|
|
| T |
14534667 |
acgcttcaaagtctcaatttctcatcacttacaaaaatccacactttagttttaacaaacaacttcttgtacggagttgttccacaccatattggagaga |
14534568 |
T |
|
| Q |
330 |
tgtccaatctagaaactcttgatttgtca |
358 |
Q |
| |
|
|||| | |||| ||||||||||||||||| |
|
|
| T |
14534567 |
tgtctagtctaaaaactcttgatttgtca |
14534539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 15009339 - 15009585
Alignment:
| Q |
19 |
tgtatttgcaacatcacctcatgctgcaacaataatccaaggcagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccaaatcaagaca |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| | || | || |
|
|
| T |
15009339 |
tgtaattgcaacatcacctcatgctgcaacaaaaatccaaggtagcgaggctgatgctctattgaagtggaaatcaagccttgacaaccatagcagggca |
15009438 |
T |
|
| Q |
119 |
ttgctttcttcatggattggtaataatccttgtagctgggaaggaattacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattg |
218 |
Q |
| |
|
|| || ||||||||||||||||||||||||||| | ||||||||||| || |||||| |||| || || |||||||||||||||||||||||| |||||| |
|
|
| T |
15009439 |
tttctctcttcatggattggtaataatccttgtggttgggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattg |
15009538 |
T |
|
| Q |
219 |
gactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaa |
265 |
Q |
| |
|
||||||||||||| ||||| ||||| || |||||||||||| ||||| |
|
|
| T |
15009539 |
gactaaaaggtacacttcagagtctcaacttctcatcacttccaaaa |
15009585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 15030437 - 15030683
Alignment:
| Q |
19 |
tgtatttgcaacatcacctcatgctgcaacaataatccaaggcagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccaaatcaagaca |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| | || | || |
|
|
| T |
15030437 |
tgtaattgcaacatcacctcatgctgcaacaaaaatccaaggtagcgaggctgatgctctattgaagtggaaatcaagccttgacaaccatagcagggca |
15030536 |
T |
|
| Q |
119 |
ttgctttcttcatggattggtaataatccttgtagctgggaaggaattacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattg |
218 |
Q |
| |
|
|| || ||||||||||||||||||||||||||| | ||||||||||| || |||||| |||| || || |||||||||||||||||||||||| |||||| |
|
|
| T |
15030537 |
tttctctcttcatggattggtaataatccttgtggttgggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattg |
15030636 |
T |
|
| Q |
219 |
gactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaa |
265 |
Q |
| |
|
||||||||||||| ||||| ||||| || |||||||||||| ||||| |
|
|
| T |
15030637 |
gactaaaaggtacacttcagagtctcaacttctcatcacttccaaaa |
15030683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 15023456 - 15023696
Alignment:
| Q |
19 |
tgtatttgcaacatcacctcatgctgcaacaataatccaaggcagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccaaatcaagaca |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| | || | || |
|
|
| T |
15023456 |
tgtaattgcaacatcacctcatgctgcaacaaaaatccaaggtagcgaggctgatgctctattgaagtggaaaacaagccttgacaaccatagcagggca |
15023555 |
T |
|
| Q |
119 |
ttgctttcttcatggattggtaataatccttgtagctgggaaggaattacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattg |
218 |
Q |
| |
|
|| || ||||||||||||||||||||||||||| | ||||||||||| || |||||| |||| || || |||||||||||||||||||||||| |||||| |
|
|
| T |
15023556 |
tttctctcttcatggattggtaataatccttgtggttgggaaggaatcacgtgtgattatgaatcgaagtccatcaacaaggtaaatctcaccaatattg |
15023655 |
T |
|
| Q |
219 |
gactaaaaggtacgcttcaaagtcttaatttctcatcactt |
259 |
Q |
| |
|
|| |||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
15023656 |
gattaaacggtactcttcaaagtctcaatttctcatcactt |
15023696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 29 - 265
Target Start/End: Original strand, 14465792 - 14466031
Alignment:
| Q |
29 |
acatcacctcatgctgcaacaataatccaaggcagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccaaatcaagacattgctttctt |
128 |
Q |
| |
|
|||||| ||||| ||||||||| |||| || |||| ||| | ||||||||||||||||||||||||||| |||||||||||| ||||||| | || |||| |
|
|
| T |
14465792 |
acatcatctcatactgcaacaaaaatcaaaagcagtgagacagatgctctgttgaagtggaaagcaagctttgacaaccaaagcaagacactactctctt |
14465891 |
T |
|
| Q |
129 |
catggattggtaataatccttgtagc---tgggaaggaattacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaa |
225 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
14465892 |
catggattggtaataatccttgtagtagttgggaaggaatcacatgtgatgatgaatcaaaatcaatctacaaggtaaatctcaccaatattggactaaa |
14465991 |
T |
|
| Q |
226 |
aggtacgcttcaaagtcttaatttctcatcactttcaaaa |
265 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
14465992 |
aggtacgcttcaaactctcaatttctcatcacttccaaaa |
14466031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 29 - 357
Target Start/End: Original strand, 15000743 - 15001074
Alignment:
| Q |
29 |
acatcacctcatgctgcaacaataatccaaggcagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccaaatcaagacattgctttctt |
128 |
Q |
| |
|
||||||||||||||||||| || || |||||| || |||| ||||||||||||||| ||||| ||||||||||||||||| | || | ||||||| |||| |
|
|
| T |
15000743 |
acatcacctcatgctgcaagaaaaaaccaaggtagtgaggttgatgctctgttgaaatggaaggcaagccttgacaaccacagcagggcattgctctctt |
15000842 |
T |
|
| Q |
129 |
catggattggtaataatcctt---gtagctgggaaggaattacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaa |
225 |
Q |
| |
|
|||||||||| |||||||||| |||| ||||||||||| || |||||| || | |||||||||||||||| | ||||||||||| ||||||||||||| |
|
|
| T |
15000843 |
catggattggcaataatccttgtagtagttgggaaggaatcacgtgtgattatcaatcaaaatccatcaacatgataaatctcaccaatattggactaaa |
15000942 |
T |
|
| Q |
226 |
aggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggg |
325 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| ||||| | | | |||||||||| ||||| ||| |||| ||||| ||| || ||||||| |
|
|
| T |
15000943 |
aggtacgcttcaaactctcaatttctcatcacttacaaaaatccacaccttagttttaacaaacaacttcttgcacggagttgttccacaccatattgga |
15001042 |
T |
|
| Q |
326 |
gtgatgtccaatctagaaactcttgatttgtc |
357 |
Q |
| |
|
| |||||| | |||| |||||||||||||||| |
|
|
| T |
15001043 |
gagatgtctagtctaaaaactcttgatttgtc |
15001074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 29 - 374
Target Start/End: Complemental strand, 14524891 - 14524546
Alignment:
| Q |
29 |
acatcacctcatgctgcaacaataatccaaggcagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccaaatcaagacattgctttctt |
128 |
Q |
| |
|
|||||||||| |||| || ||| || ||| |||||||||| ||||| | ||||| |||||||||||| |||||||||||| |||| | ||||| |||| |
|
|
| T |
14524891 |
acatcacctcttgcttcagcaaatatgcaaagcagcgaggcaaatgctttattgaaatggaaagcaagctttgacaaccaaagcaagtctttgctctctt |
14524792 |
T |
|
| Q |
129 |
catggattggtaataatccttgtagctgggaaggaattacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaagg |
228 |
Q |
| |
|
|||||||||||||||| ||||| | |||| ||||| |||||||||| | |||||||| ||| ||||| || |||| | ||||||||||||||| |
|
|
| T |
14524791 |
catggattggtaataagccttgcaattgggtgggaatcacatgtgatggcaagtcaaaatctatctacaagatacatcttgcaagtattggactaaaagg |
14524692 |
T |
|
| Q |
229 |
tacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggggtg |
328 |
Q |
| |
|
||| ||||||| ||| ||| ||||||||||| ||||| | | || ||||||||||| |||||| ||||| || ||||| ||| || ||||||| | |
|
|
| T |
14524691 |
tacacttcaaaatctcaatatctcatcacttccaaaaatccatagcttagttttaagaaacaactcattctatggagttgttccacaccatattggtcta |
14524592 |
T |
|
| Q |
329 |
atgtccaatctagaaactcttgatttgtcactaaatgaactctctg |
374 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
14524591 |
atgtgcaatctagacactcttgatttgtcactaaataaactctctg |
14524546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 29 - 359
Target Start/End: Original strand, 14480687 - 14481032
Alignment:
| Q |
29 |
acatcacctcatgctgcaacaataatccaaggcagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccaaatcaagacattgctttctt |
128 |
Q |
| |
|
|||||||||||||||| ||| || |||||||| |||||| |||||||| || ||||||||||||||| ||||||| |||| |||| | | || |||| |
|
|
| T |
14480687 |
acatcacctcatgctgatgcaaaaaaccaaggcaacgaggcagatgctcttttaaagtggaaagcaagctttgacaaacaaagcaaggaaatactctctt |
14480786 |
T |
|
| Q |
129 |
catggattggtaataatccttgt---------------agctgggaaggaattacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccga |
213 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| | ||||||| || | |||||||| || |||||| || |||||||| |
|
|
| T |
14480787 |
catggattggtaataatccttgtagtagtattggactaagttgggaaggaatcatatgtgataataactcaaaatctattaacaagatagatctcaccag |
14480886 |
T |
|
| Q |
214 |
tattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtacca |
313 |
Q |
| |
|
| ||| |||||||||||| ||||||||||| ||||||||||||||| ||||| | ||| |||||||| || ||||| |||||| || ||| | ||| |
|
|
| T |
14480887 |
ttttgaactaaaaggtacacttcaaagtctcaatttctcatcacttccaaaaatccaaaaattagttttgagaaacaacttcttctatggagttattcca |
14480986 |
T |
|
| Q |
314 |
gacaatattggggtgatgtccaatctagaaactcttgatttgtcac |
359 |
Q |
| |
|
|| ||||||| || ||||||||||| | ||||||||||| |||| |
|
|
| T |
14480987 |
taccatattggtgtaatgtccaatctgaacactcttgatttttcac |
14481032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 26 - 374
Target Start/End: Original strand, 10693 - 11041
Alignment:
| Q |
26 |
gcaacatcacctcatgctgcaacaataatccaaggcagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccaaatcaagacattgcttt |
125 |
Q |
| |
|
|||||||||||||||||| | ||| || ||| |||||||||| ||||| | ||||| |||||||||||| |||||||||||| |||| ||||||| | |
|
|
| T |
10693 |
gcaacatcacctcatgcttcgtcaaaaacgcaaagcagcgaggcaaatgctttattgaaatggaaagcaagctttgacaaccaaagcaagtcattgctct |
10792 |
T |
|
| Q |
126 |
cttcatggattggtaataatccttgtagctgggaaggaattacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaa |
225 |
Q |
| |
|
||||||||||||||||||| ||||| | |||| ||||| |||||||||| | |||||||| ||| ||||| || |||| | |||||||||||| |
|
|
| T |
10793 |
cttcatggattggtaataagccttgcaattgggtgggaatcacatgtgatggcaagtcaaaatctatctacaagatacatcttgcaagtattggactaaa |
10892 |
T |
|
| Q |
226 |
aggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggg |
325 |
Q |
| |
|
|||||| ||||||| ||| ||| ||||||||||| ||||| | | || ||||||||||| |||||| |||| || ||||| ||| | ||||||| |
|
|
| T |
10893 |
aggtacacttcaaaatctcaatatctcatcacttccaaaaatccatagcttagttttaagaaacaactcattctttggagttgttccacatcatattggt |
10992 |
T |
|
| Q |
326 |
gtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctg |
374 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10993 |
gtaatgtccaatctagaaactcttgatttgtcactaaatgaactctctg |
11041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 29 - 374
Target Start/End: Original strand, 5197 - 5545
Alignment:
| Q |
29 |
acatcacctcatgctgcaacaataatccaaggcagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccaaatcaagacattgctttctt |
128 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||| | |||| ||| |||||||||||||||||| |||||||||| | | | ||||||| |||| |
|
|
| T |
5197 |
acatcacctcatgccacaacaaaaatccaaggcagcgaagtagatgttctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctctt |
5296 |
T |
|
| Q |
129 |
catggattggtaataatccttgtagc---tgggaaggaattacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaa |
225 |
Q |
| |
|
||||||| ||||| |||||||||| ||||||||||| |||||| |||||| |||||||| ||| |||| ||||||||||| ||||||| ||||| |
|
|
| T |
5297 |
catggatcggtaacgatccttgtagtagttgggaaggaatcacatgttgtgatgactcaaaatctatctgcaagttaaatctcaccaatattggcctaaa |
5396 |
T |
|
| Q |
226 |
aggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggg |
325 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| ||||| | | |||||||||| ||| ||||| ||||| ||||| || || |||||||| |
|
|
| T |
5397 |
aggtatgcttcaaagtctcaatttctcatcacttccaaaaatccgcatcttagttttaaaaaacaattccttttacggagttgttcctcaccatattggg |
5496 |
T |
|
| Q |
326 |
gtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctg |
374 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||| ||| |||||||| |
|
|
| T |
5497 |
gtgatgtcaaatctggaaactcttgatttatcacttaatagactctctg |
5545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 26 - 374
Target Start/End: Original strand, 11336 - 11684
Alignment:
| Q |
26 |
gcaacatcacctcatgctgcaacaataatccaaggcagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccaaatcaagacattgcttt |
125 |
Q |
| |
|
|||||||||||||||||| | ||| || ||| |||||||||| ||||| | ||||| |||||||||||| |||||||||||| |||| ||||||| | |
|
|
| T |
11336 |
gcaacatcacctcatgcttcgtcaaaaacgcaaagcagcgaggcaaatgctttattgaaatggaaagcaagctttgacaaccaaagcaagtcattgctct |
11435 |
T |
|
| Q |
126 |
cttcatggattggtaataatccttgtagctgggaaggaattacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaa |
225 |
Q |
| |
|
||||||||||||||||||| ||||| | |||| ||||| |||||||||| | |||||||| ||| ||||| || |||| | |||||||||||| |
|
|
| T |
11436 |
cttcatggattggtaataagccttgcaattgggtgggaatcacatgtgatggcaagtcaaaatctatctacaagatacatcttgcaagtattggactaaa |
11535 |
T |
|
| Q |
226 |
aggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggg |
325 |
Q |
| |
|
|||||| ||||||| ||| ||| ||||||||||| ||||| | | || ||||||||||| |||||| |||| || ||||| ||| | ||||||| |
|
|
| T |
11536 |
aggtacacttcaaaatctcaatatctcatcacttccaaaaatccatagcttagttttaagaaacaactcattctttggagttgttccacatcatattggt |
11635 |
T |
|
| Q |
326 |
gtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctg |
374 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11636 |
gtaatgtccaatctagaaactcttgatttgtcactaaatgaactctctg |
11684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 29 - 374
Target Start/End: Original strand, 5841 - 6189
Alignment:
| Q |
29 |
acatcacctcatgctgcaacaataatccaaggcagcgaggctgatgctctgttgaagtggaaagcaagccttgacaaccaaatcaagacattgctttctt |
128 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||| | |||| ||| |||||||||||||||||| |||||||||| | | | ||||||| |||| |
|
|
| T |
5841 |
acatcacctcatgccacaacaaaaatccaaggcagcgaagtagatgttctattgaagtggaaagcaagctttgacaaccatagtagggcattgctctctt |
5940 |
T |
|
| Q |
129 |
catggattggtaataatccttgtagc---tgggaaggaattacatgtgatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaa |
225 |
Q |
| |
|
||||||| ||||| |||||||||| ||||||||||| |||||| |||||| |||||||| ||| |||| ||||||||||| ||||||| ||||| |
|
|
| T |
5941 |
catggatcggtaacgatccttgtagtagttgggaaggaatcacatgttgtgatgactcaaaatctatctgcaagttaaatctcaccaatattggcctaaa |
6040 |
T |
|
| Q |
226 |
aggtacgcttcaaagtcttaatttctcatcactttcaaaattgaaaagtttagttttaagtcgcaactccttctacggtgttgtaccagacaatattggg |
325 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| ||||| | | |||||||||| ||| ||||| ||||| ||||| || || |||||||| |
|
|
| T |
6041 |
aggtatgcttcaaagtctcaatttctcatcacttccaaaaatccgcatcttagttttaaaaaacaattccttttacggagttgttcctcaccatattggg |
6140 |
T |
|
| Q |
326 |
gtgatgtccaatctagaaactcttgatttgtcactaaatgaactctctg |
374 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||| ||| |||||||| |
|
|
| T |
6141 |
gtgatgtcaaatctggaaactcttgatttatcacttaatagactctctg |
6189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 264
Target Start/End: Original strand, 16170728 - 16170919
Alignment:
| Q |
73 |
tgctctgttgaagtggaaagcaagccttgacaaccaaatcaagacattgctttcttcatggattggtaataatccttgtagctgggaaggaattacatgt |
172 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||| | | | || ||||| |||||||||| ||| |||||| | || | |||| |||||| | ||| |
|
|
| T |
16170728 |
tgctttgttgaagtggaaagcaagtcttgacaaccatagccaaactttgctatcttcatggagtggcaataattcatgcaactggcttggaatttcttgt |
16170827 |
T |
|
| Q |
173 |
gatgatgattcaaaatccatcaacaaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaa |
264 |
Q |
| |
|
| || ||||| | || || |||||||||||||| |||| ||| | |||||||||||| |||||||||| |||||||||||| |||| |
|
|
| T |
16170828 |
aaagaagattccatttctgtctctaaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaa |
16170919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 16023082 - 16023149
Alignment:
| Q |
197 |
aaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaa |
264 |
Q |
| |
|
|||||||||||||| |||| ||| | |||||||||||| |||||||||| |||||||||||| |||| |
|
|
| T |
16023082 |
aaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaa |
16023149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 16101174 - 16101241
Alignment:
| Q |
197 |
aaggtaaatctcaccgatattggactaaaaggtacgcttcaaagtcttaatttctcatcactttcaaa |
264 |
Q |
| |
|
|||||||||||||| |||| ||| | |||||||||||| |||||||||| |||||||||||| |||| |
|
|
| T |
16101174 |
aaggtaaatctcacaaatatgggattgaaaggtacgcttgaaagtcttaacttctcatcacttccaaa |
16101241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 15666895 - 15666858
Alignment:
| Q |
73 |
tgctctgttgaagtggaaagcaagccttgacaaccaaa |
110 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
15666895 |
tgctttgttgaagtggaaagcaagtcttgacaaccaaa |
15666858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 19763 - 19692
Alignment:
| Q |
73 |
tgctctgttgaagtggaaagcaagccttgacaaccaaatcaagacattgctttcttcatggattggtaataa |
144 |
Q |
| |
|
|||| |||||||||||| |||||| ||||||||||||| | | || ||||| |||||||||| ||| ||||| |
|
|
| T |
19763 |
tgctttgttgaagtggatagcaagtcttgacaaccaaagccaaactttgctatcttcatggagtggcaataa |
19692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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