View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9796_low_2 (Length: 413)

Name: NF9796_low_2
Description: NF9796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9796_low_2
NF9796_low_2
[»] chr2 (6 HSPs)
chr2 (18-333)||(13281095-13281408)
chr2 (18-82)||(7488743-7488807)
chr2 (18-82)||(7498883-7498947)
chr2 (18-71)||(7435224-7435277)
chr2 (19-71)||(7524053-7524105)
chr2 (18-78)||(29352432-29352492)
[»] chr8 (7 HSPs)
chr8 (18-147)||(13472849-13472978)
chr8 (18-82)||(27230280-27230344)
chr8 (19-76)||(27183908-27183965)
chr8 (18-83)||(26540809-26540874)
chr8 (19-77)||(12652284-12652342)
chr8 (18-63)||(24466345-24466390)
chr8 (19-75)||(6117909-6117965)
[»] chr5 (6 HSPs)
chr5 (18-205)||(9764515-9764699)
chr5 (152-205)||(28995114-28995167)
chr5 (22-73)||(28867117-28867168)
chr5 (18-77)||(39724565-39724624)
chr5 (18-55)||(42840529-42840566)
chr5 (22-82)||(28994993-28995053)
[»] chr4 (1 HSPs)
chr4 (20-74)||(1327280-1327334)
[»] chr7 (2 HSPs)
chr7 (19-55)||(5442395-5442431)
chr7 (19-55)||(5451405-5451441)
[»] chr3 (1 HSPs)
chr3 (18-82)||(2703736-2703800)
[»] chr1 (2 HSPs)
chr1 (18-74)||(19219183-19219239)
chr1 (18-70)||(44187624-44187676)


Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 13281095 - 13281408
Alignment:
Q  18 aattttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttggacctttgtcttccaatttgtatcctatcgcagtcgggaagaaaggc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  13281095 aattttgggtgaaattggtgttaaagaatcatggactagactcttcgatgttggacctttgtcttccaatttgtatcctattgcagttgggaagaaaggc 13281194  T
Q  118 aatatattcttcaagaaaaaatatgataaatctaaactagtttgttttgatttaactaccggagtggttgatgatattgatgttaaaggaaaaggaggtg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13281195 aatatattcttcaagaaaaaatatgataaatctaaactagtttgttttgatttaactaccggagtggttgatgatattgatgttaaaggaaaaggaggta 13281294  T
Q  218 tttgtgacatcaaaatttacaagagaaatcttcgccgattgaaggaatgnnnnnnntagttgtttttgtagtctaagcctaaagctttcatactagaggt 317  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  13281295 tttgtgacatcaaaatttacaagaaaaatcttcgccgattgaaggaatg--aaaaatagttgtttttgtagtctaagcctaaagctttcatactagaggt 13281392  T
Q  318 ttaacattatatgatt 333  Q
    ||||||||||||||||    
T  13281393 ttaacattatatgatt 13281408  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 7488807 - 7488743
Alignment:
Q  18 aattttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttggacctttgtctt 82  Q
    ||||||||||||||||||||| |||||||||||||  | ||| |||||||||||||| |||||||    
T  7488807 aattttgggtgaaattggtgtgaaagaatcatggaaaaaacttttcaatgttggaccattgtctt 7488743  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 7498947 - 7498883
Alignment:
Q  18 aattttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttggacctttgtctt 82  Q
    |||||||| ||||||||  || |||||||||||||||| ||||||||||||||| || |||||||    
T  7498947 aattttggatgaaattgacgtgaaagaatcatggactaaactcttcaatgttgggccattgtctt 7498883  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 7435277 - 7435224
Alignment:
Q  18 aattttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttgg 71  Q
    |||||| |||||||||||||| |||||||| |||||||  ||||||| ||||||    
T  7435277 aattttaggtgaaattggtgtaaaagaatcgtggactaagctcttcattgttgg 7435224  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 7524105 - 7524053
Alignment:
Q  19 attttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttgg 71  Q
    ||||| |||||||||||||| |||||||| |||||||  ||||||| ||||||    
T  7524105 attttaggtgaaattggtgtaaaagaatcttggactaagctcttcattgttgg 7524053  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 29352492 - 29352432
Alignment:
Q  18 aattttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttggacctttg 78  Q
    |||||| |||||| ||||||| |  ||||||||||||| |||||||| | |||||||||||    
T  29352492 aattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggacctttg 29352432  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 13472978 - 13472849
Alignment:
Q  18 aattttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttggacctttgtcttccaatttgtatcctatcgcagtcgggaagaaaggc 117  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||  || | | |||||||||||||| |    || |||||||||  ||||| || |||    
T  13472978 aattttgggtgaaatcggtgtcaaagaatcatggactagactctttgatatcgaacctttgtcttccattgaacattctatcgcagctgggaaaaagggc 13472879  T
Q  118 aatatattcttcaagaaaaaatatgataaa 147  Q
    |||||||||||||| |||||| ||| ||||    
T  13472878 aatatattcttcaataaaaaagatggtaaa 13472849  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 27230344 - 27230280
Alignment:
Q  18 aattttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttggacctttgtctt 82  Q
    |||||||||||| |||||||| || ||||||||||||||||||||| || |||||||||| ||||    
T  27230344 aattttgggtgagattggtgtcaaggaatcatggactagactcttcgatattggacctttatctt 27230280  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 27183908 - 27183965
Alignment:
Q  19 attttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttggacctt 76  Q
    |||||||||||||||||||| ||||||||||||| || ||||||| || |||||||||    
T  27183908 attttgggtgaaattggtgtcaaagaatcatggattaaactcttcgatattggacctt 27183965  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 26540809 - 26540874
Alignment:
Q  18 aattttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttggacctttgtcttc 83  Q
    |||||||||| |||||||||| |||||||||||||| | ||| |||||||||| | ||||| ||||    
T  26540809 aattttgggtaaaattggtgtcaaagaatcatggacaaaacttttcaatgttgcatctttgccttc 26540874  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 12652284 - 12652342
Alignment:
Q  19 attttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttggaccttt 77  Q
    ||||||||||||||||||||| | ||||| ||||||| ||||||   ||||||||||||    
T  12652284 attttgggtgaaattggtgttgaggaatcgtggactaaactctttgttgttggaccttt 12652342  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 24466345 - 24466390
Alignment:
Q  18 aattttgggtgaaattggtgttaaagaatcatggactagactcttc 63  Q
    ||||||||||||| |||||||||| ||||| |||| ||||||||||    
T  24466345 aattttgggtgaatttggtgttaaggaatcttggattagactcttc 24466390  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 6117909 - 6117965
Alignment:
Q  19 attttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttggacct 75  Q
    |||||||||||| |||||||||||||||| |||| || ||||||   ||||||||||    
T  6117909 attttgggtgaacttggtgttaaagaatcgtggattaaactctttgttgttggacct 6117965  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 9764515 - 9764699
Alignment:
Q  18 aattttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttggacctttgtcttccaatttgtatcctatcgcagtcgggaagaaaggc 117  Q
    ||||||||||||| ||||||| || |||||||||| |||||||||| ||||||  || ||||||| || |  | ||||||||| ||  |||||||| ||     
T  9764515 aattttgggtgaacttggtgtcaaggaatcatggattagactcttctatgttgagcccttgtcttgcattgagcatcctatcggagctgggaagaatgga 9764614  T
Q  118 aatatattcttcaagaaaaaatatgataaatctaaactagtttgttttgatttaactaccggagtggttgatgatattgatgttaaag 205  Q
    |||||||||||||  |||||| ||||| |   | |||||| |||||| |||||| |||| || ||| ||||  | |||||||||||||    
T  9764615 aatatattcttcataaaaaaagatgatga---tgaactagcttgtttagatttagctactggggtgattgagaagattgatgttaaag 9764699  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 28995114 - 28995167
Alignment:
Q  152 aactagtttgttttgatttaactaccggagtggttgatgatattgatgttaaag 205  Q
    |||||||||||||||||||||||||||||||| |||| || |||||||||||||    
T  28995114 aactagtttgttttgatttaactaccggagtgattgaggagattgatgttaaag 28995167  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 28867168 - 28867117
Alignment:
Q  22 ttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttggac 73  Q
    |||||||||||||||||| | |||||||||  ||||||||||||| ||||||    
T  28867168 ttgggtgaaattggtgttgaggaatcatgggttagactcttcaatattggac 28867117  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 39724624 - 39724565
Alignment:
Q  18 aattttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttggaccttt 77  Q
    ||||||||| ||| | ||| | |||||||||||||||| |||||||| ||||||||||||    
T  39724624 aattttgggggaactcggtataaaagaatcatggactaaactcttcattgttggaccttt 39724565  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 42840566 - 42840529
Alignment:
Q  18 aattttgggtgaaattggtgttaaagaatcatggacta 55  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  42840566 aattttgggtgaacttggtgtaaaagaatcatggacta 42840529  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 28994993 - 28995053
Alignment:
Q  22 ttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttggacctttgtctt 82  Q
    |||||||||||||||||    |||||||||  |||||||||| || |||||||||||||||    
T  28994993 ttgggtgaaattggtgtcggtgaatcatggtttagactcttcgatattggacctttgtctt 28995053  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 1327280 - 1327334
Alignment:
Q  20 ttttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttggacc 74  Q
    ||||||| ||| ||||||||| |||||||||||||| |||||||| ||| |||||    
T  1327280 ttttgggcgaacttggtgttagagaatcatggactaaactcttcattgtcggacc 1327334  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 5442395 - 5442431
Alignment:
Q  19 attttgggtgaaattggtgttaaagaatcatggacta 55  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  5442395 attttaggtgaaattggtgtgaaagaatcatggacta 5442431  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 5451405 - 5451441
Alignment:
Q  19 attttgggtgaaattggtgttaaagaatcatggacta 55  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  5451405 attttaggtgaaattggtgtgaaagaatcatggacta 5451441  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 2703736 - 2703800
Alignment:
Q  18 aattttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttggacctttgtctt 82  Q
    ||||||||||||| ||||||| || |||||||||| || ||||||  |||||| ||| |||||||    
T  2703736 aattttgggtgaacttggtgtcaaggaatcatggattaaactctttgatgttgaacccttgtctt 2703800  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 19219239 - 19219183
Alignment:
Q  18 aattttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttggacc 74  Q
    ||||||||||||| | ||||| || |||||||||||||  |||||| ||||||||||    
T  19219239 aattttgggtgaactcggtgtcaaggaatcatggactaagctcttcgatgttggacc 19219183  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 44187676 - 44187624
Alignment:
Q  18 aattttgggtgaaattggtgttaaagaatcatggactagactcttcaatgttg 70  Q
    ||||||||||||  |||||||||| ||||| |||  |||||||||||||||||    
T  44187676 aattttgggtgagcttggtgttaaggaatcctgggttagactcttcaatgttg 44187624  T

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