View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9796_low_4 (Length: 400)
Name: NF9796_low_4
Description: NF9796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9796_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 32810784 - 32810666
Alignment:
| Q |
1 |
aataacaactaatatataaaaattacttaatagcatatttacactaataatttattaattcaactaagcatcctctgtcatttagttctctatcatgttt |
100 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32810784 |
aataataactaatatataaaaattactaaatagcatatttacactaataatttattaattcaactaagcatcctctgtcatttagttctctatcatgttt |
32810685 |
T |
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| Q |
101 |
taaatatatgtaactctag |
119 |
Q |
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| T |
32810684 |
taaatatatgtaactctag |
32810666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 273 - 355
Target Start/End: Complemental strand, 32809751 - 32809669
Alignment:
| Q |
273 |
gaaattggtaaccgaagaccaagaggaagaccacctggatccaaaaacatagcacaattcgcaagaaggcgtcaatgtggtgc |
355 |
Q |
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| T |
32809751 |
gaaattggtaaccgaagaccaagaggaagaccacctggatccaaaaacatagcacaattcgcaagaaggcgtcaatgtggtgc |
32809669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 32810599 - 32810527
Alignment:
| Q |
186 |
caaccaaccggtaacaatgtttgttgggttggatagtgtgctagtagctgaaatggttacaacttacaaggtt |
258 |
Q |
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| T |
32810599 |
caaccaaccggtaacaatgtttgttgggttggatagtgtgctagtagctgaaatggttacaacttacaaggtt |
32810527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 32803294 - 32803243
Alignment:
| Q |
270 |
gtcgaaattggtaaccgaagaccaagaggaagaccacctggatccaaaaaca |
321 |
Q |
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| T |
32803294 |
gtcgaagttggtaaccgaagaccaagaggaagaccacctggatccaaaaaca |
32803243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 16578604 - 16578652
Alignment:
| Q |
273 |
gaaattggtaaccgaagaccaagaggaagaccacctggatccaaaaaca |
321 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| || || ||||||| |
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| T |
16578604 |
gaaattggaaaccgaagaccaagaggaagaccacccggttcaaaaaaca |
16578652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 7599007 - 7599078
Alignment:
| Q |
1 |
aataacaactaatatataaaaattacttaatagcatatttacactaataatttattaattcaactaagcatcct |
74 |
Q |
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|||||||||||||||||||||| |||| |||| |||||||| |||||||||||||| | |||||||||||||| |
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| T |
7599007 |
aataacaactaatatataaaaa-tactaaataacatattta-actaataatttattgacacaactaagcatcct |
7599078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 321
Target Start/End: Complemental strand, 3332434 - 3332399
Alignment:
| Q |
286 |
gaagaccaagaggaagaccacctggatccaaaaaca |
321 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
3332434 |
gaagaccaagaggaagaccagctggatccaaaaaca |
3332399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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