View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9797_low_1 (Length: 384)
Name: NF9797_low_1
Description: NF9797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9797_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 13268586 - 13268951
Alignment:
| Q |
1 |
aaataacacagtaagataataaaactaaaaatcttatataccttccattgtctagctttctcaagctcaataatatcagcaatttcagggtcaatttcct |
100 |
Q |
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| T |
13268586 |
aaataacacagtaagataataaaactaaaaatcttatataccttccattgtctagctttctcaagctcaataatatcagcaatttcagggtcaatttcct |
13268685 |
T |
|
| Q |
101 |
caagtgaagaattcaattgctttggccactgcaaaagtaataagatatttcaaatctaatcaaaaaccttcacaatcataacaatcaaatccaaaagtct |
200 |
Q |
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| T |
13268686 |
caagtgaagaattcaattgctttggccactgcaaaagtaataacatatttcaaatctaatcaaaaaccttcacaatcataacaatcaaatccaaaagtct |
13268785 |
T |
|
| Q |
201 |
cttttctaacatgaaacatattaatatccggtgcatcttttggattaacggtaagtttgacataatcacaatatgtcacactttgaagtttcaacaaaat |
300 |
Q |
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| T |
13268786 |
cttttctaacatgaaacatattaatatccggtgcatcttttggattaatggtaagtttggcataaccataatatgtcccagtttgaagtttcaacaaaat |
13268885 |
T |
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| Q |
301 |
catgtgtcaccacgattttgtcaaactcaccgtgattccaaacatgtacgtagtcattgatatatt |
366 |
Q |
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| T |
13268886 |
catgtgttaccgcgattttgtcaaactcaccgtgattccaaacatgtacgtagtcattgatatatt |
13268951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 349
Target Start/End: Original strand, 26533210 - 26533245
Alignment:
| Q |
314 |
gattttgtcaaactcaccgtgattccaaacatgtac |
349 |
Q |
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| T |
26533210 |
gattttgtcaaactcaccgtaattccaaacatgtac |
26533245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 11271795 - 11271727
Alignment:
| Q |
278 |
acactttgaagtttcaacaaaatca-tgtgtcaccacgattttgtcaaactcaccgtgattccaaacatg |
346 |
Q |
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| T |
11271795 |
acactttggagctttatcaaaatcactgtgacaccatgattttgtcaaactcaccgt-attccaaacatg |
11271727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 7552423 - 7552467
Alignment:
| Q |
305 |
tgtcaccacgattttgtcaaactcaccgtgattccaaacatgtac |
349 |
Q |
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| T |
7552423 |
tgtcaccttgatattgtcaaactcaccgcgattccaaacatgtac |
7552467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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