View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9797_low_3 (Length: 275)
Name: NF9797_low_3
Description: NF9797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9797_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 40629638 - 40629364
Alignment:
| Q |
1 |
aggtcaatgatgggattgttagagcagattgaacaacgcggggaaggcgaacaggaacaagcgttgcgagaatgggcagagaagttgaaagatgttgc-- |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40629638 |
aggtcaatgatgggattgttagagcagattgaacaacgcggggaaggcgaacaggaacaagcgttgcgagaatgggcagagaagttgaaagatgttgctt |
40629539 |
T |
|
| Q |
99 |
-----gcaaaggacgtgatagatacgtttgtgataaaatcagtgaagaggaggaggtggggagttttgcattggtatgacaaatacaaggttggaaaaga |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40629538 |
tggatgcaaaggacgtgatagatacgtttgtgataaaatcagtgaagaggaggaggtggggagttttgcattggtatgacaaatacaaggttggaaaaga |
40629439 |
T |
|
| Q |
194 |
gctggagaagatccgaaagaggatgagagatatctctcagaaaataatgaacttaaatttggatgttagtatctc |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40629438 |
gctggagaagatccgaaagaggatgagagatatctctcagaaaataatgaacttaaatttggatgttagtatctc |
40629364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 40635497 - 40635773
Alignment:
| Q |
1 |
aggtcaatgatgggattgttagagcagattgaacaacgcggggaaggcgaacaggaacaagcgttgcgagaatgggcagagaagttgaaagatgttgc-- |
98 |
Q |
| |
|
||||||||| |||||||||||| ||| |||| || |||||||| || ||||||||||||| |||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
40635497 |
aggtcaatgcggggattgttagaacaggttgagcagcgcggggatggagaacaggaacaagagttgaaagaatgggcggagaagttgaaggatgttgctc |
40635596 |
T |
|
| Q |
99 |
-----gcaaaggacgtgatagatacgtttgtgataaaatcagtgaagaggaggaggtggggagttttgcattggtatgacaaatacaaggttggaaaaga |
193 |
Q |
| |
|
|||||| | |||||||| ||||| || || |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
40635597 |
tagatgcaaagaatgtgatagaaacgttcgtcatcaaatcagtcaagaggaggaggtggggtgttttgcattggtatgataaatacaaagttggaaaaga |
40635696 |
T |
|
| Q |
194 |
gctggagaagatccgaaagaggatgagagatatctctcagaaaataatgaacttaaatttggatgttagtatctctg |
270 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| |||||| |
|
|
| T |
40635697 |
gctggaggagatccgaaagaggatgagagacatctctcagaaaataatgaatttaaacttggatgttagtgtctctg |
40635773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 103 - 234
Target Start/End: Original strand, 40656188 - 40656319
Alignment:
| Q |
103 |
aggacgtgatagatacgtttgtgataaaatcagtgaagaggaggaggtggggagttttgcattggtatgacaaatacaaggttggaaaagagctggagaa |
202 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||| ||||| |||||||| ||||||||| || ||||| ||||||| |||||||||| |||||| || |||| |
|
|
| T |
40656188 |
aggatgtgatagaaacgtttgtgatcaaatcggtgaaaaggaggagatggggagttctgtattggattgacaaacacaaggttgggaaagagttgcagaa |
40656287 |
T |
|
| Q |
203 |
gatccgaaagaggatgagagatatctctcaga |
234 |
Q |
| |
|
|||||| | |||||||||||| |||||||||| |
|
|
| T |
40656288 |
gatccgcaggaggatgagagacatctctcaga |
40656319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University