View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9797_low_6 (Length: 225)
Name: NF9797_low_6
Description: NF9797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9797_low_6 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 26835265 - 26835071
Alignment:
| Q |
15 |
cagagaggttcatggatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgac |
114 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26835265 |
cagagaggttcgtcgatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgac |
26835166 |
T |
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| Q |
115 |
atttatggagtacaagatagtattaacaatgcttctctctaacttcacttttaagatttcgccaggttaccatcattcaccagccatcatgctct |
209 |
Q |
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| T |
26835165 |
atttatggagtacaagatagtattaacaatgcttctctctaacttcacttttaaggtttcgccaggttaccatcattcaccagccatcatgctct |
26835071 |
T |
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Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 45420074 - 45419880
Alignment:
| Q |
15 |
cagagaggttcatggatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgac |
114 |
Q |
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| T |
45420074 |
cagagaggttcatggatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgac |
45419975 |
T |
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| Q |
115 |
atttatggagtacaagatagtattaacaatgcttctctctaacttcacttttaagatttcgccaggttaccatcattcaccagccatcatgctct |
209 |
Q |
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| T |
45419974 |
atttatggagtacaagatagtgttaacaatacttctctctaacttcacttttaaggtttcgccaggttaccatcattcaccagccatcatgctct |
45419880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 45410765 - 45410571
Alignment:
| Q |
15 |
cagagaggttcatggatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgac |
114 |
Q |
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| T |
45410765 |
cagagaggttcatggatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgac |
45410666 |
T |
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| Q |
115 |
atttatggagtacaagatagtattaacaatgcttctctctaacttcacttttaagatttcgccaggttaccatcattcaccagccatcatgctct |
209 |
Q |
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| T |
45410665 |
atttatggagtacaagatagtgttaacaatacttctctctaacttcacttttaaggtttcgccaagttatcaacattcaccagccatcatgctct |
45410571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 29799821 - 29799689
Alignment:
| Q |
23 |
ttcatggatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatgg |
122 |
Q |
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| T |
29799821 |
ttcatggatgatgtaaatggtggatgcaaccaaaaaatgggatacttaccttttggatttggaggaagaatgtgtgttggtagaaacttgagctttatgg |
29799722 |
T |
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| Q |
123 |
agtacaagatagtattaacaatgcttctctcta |
155 |
Q |
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| T |
29799721 |
agtataagatagtgttaacccttcttctctcta |
29799689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 63592 - 63466
Alignment:
| Q |
15 |
cagagaggttcatggatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgac |
114 |
Q |
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| T |
63592 |
cagagaggttcatgaatgatgccaatggggaatgccaccacacaatggggtacttgccttttggttttggagggagagcatgtattggtaggaacttgat |
63493 |
T |
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| Q |
115 |
atttatggagtacaagatagtattaac |
141 |
Q |
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| T |
63492 |
cttcatggagtataacatagtgttaac |
63466 |
T |
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