View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9797_low_7 (Length: 222)
Name: NF9797_low_7
Description: NF9797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9797_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 52433569 - 52433376
Alignment:
| Q |
12 |
cagagaagcacaaatataaacaattatatcaaatttttagtgcatatataaatttatgattgaaaaaatggaaatggtgaaggttgagcagtaaattaaa |
111 |
Q |
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| T |
52433569 |
cagagaagcacaaatataaacaattatatcaaatttttggtgcatatataaatttatgattgagaaaatggaaatggtgaaggttgaacagtaaattaaa |
52433470 |
T |
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| Q |
112 |
tatatagtaaacctggaacatttcctcattgtaggatccaggagagtattgaaggggtttataaccaccatcactgaaagcccatgttcttgct |
205 |
Q |
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| T |
52433469 |
tatatagtaaacctggaacatttcctcattgtaggatccaggagagtattgaaggggtttataaccaccatcactgaaagcccatgttcttgct |
52433376 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 8010747 - 8010674
Alignment:
| Q |
128 |
aacatttcctcattgtaggatccaggagagtattgaaggggtttataaccaccatcactgaaagcccatgttct |
201 |
Q |
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| T |
8010747 |
aacatttgttcattgtagaagccaggagaatattgcaaaggactataaccaccatcactgaaagcccaagttct |
8010674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 38085978 - 38086031
Alignment:
| Q |
149 |
ccaggagagtattgaaggggtttataaccaccatcactgaaagcccatgttctt |
202 |
Q |
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| T |
38085978 |
ccaggagagatttgaagagctttataacctccatcattgaaagcccatgttctt |
38086031 |
T |
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