View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_high_1 (Length: 677)
Name: NF9798_high_1
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_high_1 |
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| [»] scaffold0662 (1 HSPs) |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 567; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 16 - 662
Target Start/End: Complemental strand, 3034839 - 3034193
Alignment:
| Q |
16 |
tgatttacatcagaaaaagaaaccccaacaacaatctcaaacacaatgaagaaattgaagaactattacatgcacttcaaaaacnnnnnnnnnnnnnnnn |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3034839 |
tgatttacatcagaaaaagaaaccccaacaacaatctcaaacacaatgaagaaattgaagaactattacatgcacttcaaaaaccatcatcatcatcatc |
3034740 |
T |
|
| Q |
116 |
nnnnnnnnccagaaagaaaatggattttcccacttgcaattggttcaattctctctctttttcttctcttcattgcaacactaacatcaccacaaggcac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3034739 |
atcaatcaccagaaagaaaatggattttcccacttgcaattggttcaattctctctctttttcttctcttcattgcaacactaacatcaccacaaggcac |
3034640 |
T |
|
| Q |
216 |
acacattctaccattttaccgttccatttcagcttcatattcagtttttgttgaaaataaaatcaagcctttaccagtttcaaccctccctccaccacca |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3034639 |
acacattctaccattttaccgttccatttcagcttcatattcagtttttgttgaaaataaaatcaagcctttaccagtttcaaccctccctccaccacca |
3034540 |
T |
|
| Q |
316 |
cgtcttgcttatttaatctccggctccgccggagacggtggttctgtcaaaagggtgcttcttgctatgtatcatccacataaccgttatgttgtgcatc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3034539 |
cgtcttgcttatttaatctccggctccgccggagacggtggttctgtcaaaagggtgcttcttgctatgtatcatccacataaccgttatgttgttcatc |
3034440 |
T |
|
| Q |
416 |
ttgatcttgaaagttctgcaaaagaacgtgcggatctgtttgagtttgtgatgaatcatgagttgtttaagagatttgagaatgttaagatgattactaa |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3034439 |
ttgatcttgaaagttctgcaaaagaacgtgcggatctgtttgagtttgtgatgaatcatgagttgtttaagagatttgagaatgttaagatgattactaa |
3034340 |
T |
|
| Q |
516 |
ggcgaatcttattacttatagaggtcctactatggttgctaatactcttcatgctgctgctattttgttgaaggaatttggtgattgggattggtttatc |
615 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3034339 |
ggcgaatcttattacttatagaggtcctactatggttgctaatactcttcatgctgctgctattttgttgaaggaatgtggtgattgggattggtttatc |
3034240 |
T |
|
| Q |
616 |
aatcttagtgcttctgattatccacttgttactcaagatggtttgtg |
662 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3034239 |
aatcttagtgcttctgattatccacttgttactcaagatggtttgtg |
3034193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 601 - 657
Target Start/End: Complemental strand, 9538180 - 9538124
Alignment:
| Q |
601 |
tgggattggtttatcaatcttagtgcttctgattatccacttgttactcaagatggt |
657 |
Q |
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|||||||||||||| ||||||||||||||||||||||| | ||||| ||||||||| |
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| T |
9538180 |
tgggattggtttattaatcttagtgcttctgattatcctttggttacacaagatggt |
9538124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 496 - 661
Target Start/End: Original strand, 4637 - 4802
Alignment:
| Q |
496 |
aatgttaagatgattactaaggcgaatcttattacttatagaggtcctactatggttgctaatactcttcatgctgctgctattttgttgaaggaatttg |
595 |
Q |
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||||||| ||||||| |||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || ||| || |
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| T |
4637 |
aatgttaggatgattgttaaggctaatttggttacttatagaggtcctactatggttactaatactcttcatgctgctgcacttttgtttaaagaagctg |
4736 |
T |
|
| Q |
596 |
gtgattgggattggtttatcaatcttagtgcttctgattatccacttg-ttactcaagatggtttgt |
661 |
Q |
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| ||||||||||||||||| ||||||||||||||||||||||| |||| |||| ||||||||||||| |
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| T |
4737 |
gggattgggattggtttattaatcttagtgcttctgattatcc-cttgcttacacaagatggtttgt |
4802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 6e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 496 - 661
Target Start/End: Original strand, 47025758 - 47025923
Alignment:
| Q |
496 |
aatgttaagatgattactaaggcgaatcttattacttatagaggtcctactatggttgctaatactcttcatgctgctgctattttgttgaaggaatttg |
595 |
Q |
| |
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||||||| ||||||| |||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || ||| || |
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| T |
47025758 |
aatgttaggatgattgttaaggctaatttggttacttatagaggtcctactatggttactaatactcttcatgctgctgcacttttgtttaaagaagctg |
47025857 |
T |
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| Q |
596 |
gtgattgggattggtttatcaatcttagtgcttctgattatccacttg-ttactcaagatggtttgt |
661 |
Q |
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| ||||||||||||||||| ||||||||||||||||||||||| |||| |||| ||||||||||||| |
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| T |
47025858 |
gggattgggattggtttattaatcttagtgcttctgattatcc-cttgcttacacaagatggtttgt |
47025923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 593 - 635
Target Start/End: Original strand, 7421917 - 7421959
Alignment:
| Q |
593 |
ttggtgattgggattggtttatcaatcttagtgcttctgatta |
635 |
Q |
| |
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|||||||||||||||||||| | |||||||||||||||||||| |
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| T |
7421917 |
ttggtgattgggattggtttgttaatcttagtgcttctgatta |
7421959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 547 - 658
Target Start/End: Original strand, 33230899 - 33231010
Alignment:
| Q |
547 |
atggttgctaatactcttcatgctgctgctattttgttgaaggaatttggtgattgggattggtttatcaatcttagtgcttctgattatccacttgtta |
646 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| | ||| | | ||||||||||||||||| ||||||||||||||||||||||| ||||| | |
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| T |
33230899 |
atggttgctaatactcttcatgcttgtgctattttgctcaagagaagtaaagattgggattggtttattaatcttagtgcttctgattatcctcttgtca |
33230998 |
T |
|
| Q |
647 |
ctcaagatggtt |
658 |
Q |
| |
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|||||||||||| |
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| T |
33230999 |
ctcaagatggtt |
33231010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 599 - 657
Target Start/End: Original strand, 33717773 - 33717831
Alignment:
| Q |
599 |
attgggattggtttatcaatcttagtgcttctgattatccacttgttactcaagatggt |
657 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| | ||||| ||||||||| |
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|
| T |
33717773 |
attgggattggtttattaatcttagtgcttctgattatccattggttacacaagatggt |
33717831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 16985 - 17041
Alignment:
| Q |
422 |
ttgaaagttctgcaaaagaacgtgcggatctgtttgagtttgtgatgaatcatgagt |
478 |
Q |
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|||||| ||||||||||||| |||| ||||||||||||||||| ||||||||||||| |
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| T |
16985 |
ttgaaacttctgcaaaagaatgtgcagatctgtttgagtttgtaatgaatcatgagt |
17041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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