View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_high_10 (Length: 333)
Name: NF9798_high_10
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 8e-89; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 141 - 321
Target Start/End: Original strand, 9967193 - 9967371
Alignment:
| Q |
141 |
tctaattttgcaacactaacgtacgaatgtgatttttctttgcaatttgtatctaatgttgcataactgaagttaaacaactcattaaaaagcgcacgtg |
240 |
Q |
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| T |
9967193 |
tctaattttgcaacactaacgtacgaatgtgatttttctttgcaatttgtatctaatgttgcataactgaaattaaacaactcattaaaaagcgcacgtg |
9967292 |
T |
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| Q |
241 |
ataacttgtatagctaaaacacatgtgaatataactaagatatcacatgcaattttttatgagtcattttatcttagccct |
321 |
Q |
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| T |
9967293 |
ataacttgtatagctaaaacacatgtgaatataactaagatatcacatgcaattttt--tgagtcattttatcttagccct |
9967371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 191 - 299
Target Start/End: Complemental strand, 9960021 - 9959917
Alignment:
| Q |
191 |
atctaatgttgcataactgaagttaaacaactcattaaaaagcgcacgtgataacttgtatagctaaaacacatgtgaatataactaagatatcacatgc |
290 |
Q |
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| T |
9960021 |
atctaatgttgcataattgaaattaaacaactcattaaaaagcgcacgtgataacttgcataactaaaacgcgtgtgaat----ttaagatatcacgtgc |
9959926 |
T |
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| Q |
291 |
aatttttta |
299 |
Q |
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| T |
9959925 |
aatttttta |
9959917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 9974093 - 9974176
Alignment:
| Q |
191 |
atctaatgttgcataactgaagttaaacaactcattaaaaagcgcacgtgataacttgtatagctaaaacacatgtgaatataa |
274 |
Q |
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| T |
9974093 |
atctaatgttgcataactgaaattaaacgactcattaaaaagcgcacgtgataacttgcataactaaaacgcgtgtgaatataa |
9974176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 9962280 - 9962332
Alignment:
| Q |
8 |
gaaatggccaaataacaatgatagaggcttatggatccgttttatagagataa |
60 |
Q |
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| T |
9962280 |
gaaatggccaaataacaatgatagaggcttatggatccgttttatagagataa |
9962332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 9983096 - 9983167
Alignment:
| Q |
8 |
gaaatggccaaataacaatgatagaggcttatggatccgttttatagagataagtggtcttgttgtttatgg |
79 |
Q |
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| T |
9983096 |
gaaatggccaaatgacaattataaaggttcatggatccgttttatagagataagtggtcttattgtttatgg |
9983167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 9868739 - 9868821
Alignment:
| Q |
166 |
aatgtgatttttctttgcaatttgtatctaatgttgcataactgaagttaaacaactcattaaaaagcgcacgtgataacttg |
248 |
Q |
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| T |
9868739 |
aatgtgatttttattggcaatttgtatatgatgttgcagaactgaaattaaatgactcattaaaaagtacacgtgataacttg |
9868821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 9983182 - 9983232
Alignment:
| Q |
76 |
atggcaaaggttctcaatggtgggactgccattccaatatcaagtgtgaaa |
126 |
Q |
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| T |
9983182 |
atggcaaaggtgctcaatggtgggattgccattccaatatcaagtgtgaaa |
9983232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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