View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_high_11 (Length: 332)
Name: NF9798_high_11
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 23285171 - 23285488
Alignment:
| Q |
11 |
tagtttaagttagaagttgcatttggttgcagtcatatcccccctcgaagcaactttattgttataacagaataagaaacgaattaattattactttgat |
110 |
Q |
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| T |
23285171 |
tagtttaagttagaagtcgtagttggttgcagtcatatccc---tcgaagcaactttattgttataacagaataagaatcgaatttattattactttgat |
23285267 |
T |
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| Q |
111 |
caaagtaactgtccaagaaattctcaagactcctctcattcgtcaagttgaagaggatacattaaattggagaattgagaagaatggaaattattctctt |
210 |
Q |
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| T |
23285268 |
caaagta-ctgtccaagaaattctcaagactcctctcattcgt-aagttgaagaggatacgttaaattggagaattgagaagaacggaaattattctctt |
23285365 |
T |
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| Q |
211 |
agatgtgtat----------------aactttcaagagagtcaaatagatttggcgcggaggccacctgaggaaatacggcatattggcatgacacaagt |
294 |
Q |
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| T |
23285366 |
agatgtgtataactaactagtataacaactttcaagagagtcaaatagatttggcgcggaggccacctgaggaaatacggcatattggcatgacacaagt |
23285465 |
T |
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| Q |
295 |
tttgtcttatgatagttctatgt |
317 |
Q |
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| T |
23285466 |
tttgtcttatgatagttctatgt |
23285488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 11115106 - 11115220
Alignment:
| Q |
92 |
aattaattattactttgatcaaagtaactgtccaagaaattctcaagactcctctcattcgtcaagttgaagaggatacattaaattggagaattgagaa |
191 |
Q |
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|||| ||||||| ||||||||| || |||||||| ||||||||||| |||||||| || |||||||||||||| |||| |||| || || |||||||| |
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| T |
11115106 |
aatttattattattttgatcaa-gttactgtccaggaaattctcaacactcctcttatccgtcaagttgaagaagataggttaatttagaacattgagaa |
11115204 |
T |
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| Q |
192 |
gaatggaaattattct |
207 |
Q |
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| T |
11115205 |
gagtggaaattattct |
11115220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 93 - 207
Target Start/End: Original strand, 25937928 - 25938041
Alignment:
| Q |
93 |
attaattattactttgatcaaagtaactgtccaagaaattctcaagactcctctcattcgtcaagttgaagaggatacattaaattggagaattgagaag |
192 |
Q |
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||||||||||| ||||||||| | |||||||| |||||||| ||||||||||| |||||||| |||||||||||| |||| ||||||| ||||||| |
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| T |
25937928 |
attaattattattttgatcaa-gacactgtccaggaaattcttaagactcctctgtttcgtcaaattgaagaggataatttaatttggagagttgagaaa |
25938026 |
T |
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| Q |
193 |
aatggaaattattct |
207 |
Q |
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|||||| | |||||| |
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| T |
25938027 |
aatggacaatattct |
25938041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 30093092 - 30092995
Alignment:
| Q |
93 |
attaattattactttgatcaaagtaactgtccaagaaattctcaagactcctctcattcgtcaagttgaagaggatacattaaattggagaattgagaa |
191 |
Q |
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|||||||| || ||||||||| | |||||||| ||||||| ||||||||||| |||||||||| |||||||||| ||||| || |||| ||||||| |
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| T |
30093092 |
attaattactattttgatcaa-gacactgtccaggaaattcgtaagactcctcttgttcgtcaagtcgaagaggataaattaatttagagagttgagaa |
30092995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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