View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_high_14 (Length: 325)
Name: NF9798_high_14
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 26039108 - 26039402
Alignment:
| Q |
16 |
catatttttgatgctcagactttaaacaacaatcaaaacactcattcacactcttattttcagaaacccatcctttgtgacatcaccgtccattatcaac |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26039108 |
catatttttgatgctcagactttaaacaacaatcaaaacactcattcacactcttatcttcagaaacccatcttttgtgacatcaccgtccattatcaac |
26039207 |
T |
|
| Q |
116 |
gtgcaagaaacctgccatcactggccgtcaaccctcccctgtttggagccctcaccaataaaacatcaaatcagcatgcccatgaccgcaccatcatagc |
215 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| |||||| |
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| T |
26039208 |
gtgcaagaaatctgccatcactggccgtcaaccctcccctgtttggagtcctcaccaat--aacat-aaatcagcatgcccatgaccgcaccaccatagc |
26039304 |
T |
|
| Q |
216 |
cgtgattccagttaagagcttccacgaaaaggataatctatcctaccaccatcaatcacataatgcattcgtctccttccacctccataaacagcctt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26039305 |
cgtgattccagttaagagcttccacgaaaaggataatctatcctaactccatcaatcacataatgcattcgtctccttccacctccataaacaacctt |
26039402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 275
Target Start/End: Complemental strand, 24923824 - 24923675
Alignment:
| Q |
127 |
ctgccatcactggccgtcaaccctccc-ctgtttggagccctcaccaataaaacatcaaatcagcatgcccatgaccgcaccatcatagccgtgattcca |
225 |
Q |
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|||||||| ||||||||||||||| | |||||||| ||||||||||| ||| |||||| | ||||||||||| |||| ||||||||| |||||| |
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| T |
24923824 |
ctgccatcgttggccgtcaaccctctctctgtttggtgccctcaccaacaaagtatcaaactggtatgcccatgactgcacttccatagccgtaattcca |
24923725 |
T |
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| Q |
226 |
gttaagagcttccacgaaaaggataatctatcctaccaccatcaatcaca |
275 |
Q |
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| T |
24923724 |
gcttagagcttccacaaacagaacaatctaccctaactccagcaatcaca |
24923675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 281
Target Start/End: Complemental strand, 25674240 - 25674085
Alignment:
| Q |
127 |
ctgccatcactggccgtcaaccctccc-ctgtttggagccctcaccaataaaacatcaaatcagcatgcccatgaccgcaccatcatagccgtgattcca |
225 |
Q |
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|||||||| ||||||||||||||| | |||||||| | ||||||||| ||| |||||| | ||||||||||| |||| ||||||||| |||||| |
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| T |
25674240 |
ctgccatcgttggccgtcaaccctctctctgtttggtgtcctcaccaacaaagtatcaaactggtatgcccatgactgcacttccatagccgtaattcca |
25674141 |
T |
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| Q |
226 |
gttaagagcttccacgaaaaggataatctatcctaccaccatcaatcacataatgc |
281 |
Q |
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| T |
25674140 |
gctaagagcttccacaaacagaacaatctaccctaaatccaccaatcacatgatgc |
25674085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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