View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_high_15 (Length: 310)
Name: NF9798_high_15
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_high_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 88 - 310
Target Start/End: Original strand, 20975982 - 20976216
Alignment:
| Q |
88 |
aacaagtaattgaaggattataaataacagaagaagcaaagaataaattgatcatataactagggactaaaggatcaaaagtggaatattgaaatgat-- |
185 |
Q |
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| T |
20975982 |
aacaagtaattgaaggattctaaataacagaagaagcaaagaataaattgatcatataactagggactaaaggatcaaaagcggaatattgaaatgatga |
20976081 |
T |
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| Q |
186 |
---------gattgaagatttatatactgt-atgaaattgatgctacatagtcacacatttctaactagtggtacttgtatgaaatcaggtatggatatt |
275 |
Q |
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| T |
20976082 |
ttgaagtaagattgaagatttatatactttgttggtgttgatgctacatagtcacacatttctaactagtggtacttgtatgaaatcaggtatggatatt |
20976181 |
T |
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| Q |
276 |
gtgcaatgattgtggtgtaaactctcatgtgcaat |
310 |
Q |
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| T |
20976182 |
gtgcaatgattgtggtgtaaactctcatgtgcaat |
20976216 |
T |
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