View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_high_2 (Length: 548)
Name: NF9798_high_2
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 38728809 - 38728351
Alignment:
| Q |
1 |
aattccgacaattgacctttccatggaacggtcagagttgtcggaattagttgtgaaagcttgcgaagaatatggnnnnnnnaaggtggtgaatcatggt |
100 |
Q |
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| T |
38728809 |
aattccgacaattgacctttccatggaaaggtcagagttgtcggaattagttgtgaaagcttgcgaagaatatggtttttttaaggtggtgaatcatggt |
38728710 |
T |
|
| Q |
101 |
ataccaaaggaggttatttcaaggttggaaaatgaaggaacagagtttttctcaaaaaactcttcagagaaacttcaagctggtacttctactccttttg |
200 |
Q |
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| T |
38728709 |
ataccaaaggaggttatttcaaggttggaaaatgaaggaacagagtttttctcaaaaaactctacagagaaacttcaagctggtacttctactccttttg |
38728610 |
T |
|
| Q |
201 |
gttatggctgcaaaaatattggtcccaatggtgataaaggtgaccttgaatatcttctccttcacaccaatcctaattcaatctctgagagatccaaaac |
300 |
Q |
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| T |
38728609 |
gttatggctgcaaaaatattggtcccaatggtgataaaggtgaccttgagtatcttctccttcacaccaatcctaattcaatctctgagagatccaaaac |
38728510 |
T |
|
| Q |
301 |
catagcaaaagaccaccctatcaagttcaggtattgattcagtcactcattaattgtaacttaattagataaaatatttgtcaataatatattccaacct |
400 |
Q |
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| T |
38728509 |
cattgcaaaagatcaccctatcaagttcaggtattgattccgtcactcattaattgtaacttaattagataaaatatttgtcaataatatattccaacct |
38728410 |
T |
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| Q |
401 |
ttaacatgaacaattaatttgatattggtttataacataatgataaaaagtgggggaaa |
459 |
Q |
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| T |
38728409 |
ttaacatgaacaattaatttgatattggtttataacataatgataaaaagtgggggaaa |
38728351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 488 - 533
Target Start/End: Complemental strand, 38728318 - 38728273
Alignment:
| Q |
488 |
cggagattgaggggactttaggattataatatatgaagtaatatat |
533 |
Q |
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| T |
38728318 |
cggagattgaggggactttaggattataatatatgaagtaatatat |
38728273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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